Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0248
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 149 2e-36
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 149 2e-36
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 147 6e-36
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 147 6e-36
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 146 9e-36
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 146 9e-36
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 146 9e-36
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 89 2e-18
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 89 2e-18
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 89 3e-18
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 89 3e-18
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 87 1e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 87 1e-17
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 87 1e-17
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 87 1e-17
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 87 1e-17
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 62 3e-10
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 2.1
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 2.1
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain... 28 4.8
At3g03950.2 68416.m00414 expressed protein contains Pfam profile... 28 4.8
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 149 bits (360), Expect = 2e-36
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+
Sbjct: 189 LSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAI 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (315), Expect = 6e-31
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F IYP+PQVSTAVVEPYN
Sbjct: 164 KSKLGFTIYPSPQVSTAVVEPYN 186
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/64 (65%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISA KAYHEQLSV EITNA FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 149 bits (360), Expect = 2e-36
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+
Sbjct: 189 LSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAI 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (315), Expect = 6e-31
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F IYP+PQVSTAVVEPYN
Sbjct: 164 KSKLGFTIYPSPQVSTAVVEPYN 186
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/64 (65%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISA KAYHEQLSV EITNA FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 147 bits (356), Expect = 6e-36
Identities = 64/84 (76%), Positives = 78/84 (92%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGAL
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (313), Expect = 1e-30
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F +YP+PQVST+VVEPYN
Sbjct: 164 KSKLGFTVYPSPQVSTSVVEPYN 186
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 147 bits (356), Expect = 6e-36
Identities = 64/84 (76%), Positives = 78/84 (92%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGAL
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (313), Expect = 1e-30
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F +YP+PQVST+VVEPYN
Sbjct: 164 KSKLGFTVYPSPQVSTSVVEPYN 186
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 9e-36
Identities = 69/119 (57%), Positives = 82/119 (68%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D ++DNEAIYDICRR+LDIERPTY+NLNRLI Q +SS+T SLRFDGA+
Sbjct: 189 LSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAI 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTRW*KATP 612
NVD+TEFQTNLVPYPRIHF L +Y + F P T P K P
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDP 307
Score = 124 bits (298), Expect = 7e-29
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYT+G+EIVD L+R+RKLAD CTGLQGFL+F+ LL+ERLSVD+GK
Sbjct: 104 ARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F IYP+PQVSTAVVEPYN
Sbjct: 164 KSKLGFTIYPSPQVSTAVVEPYN 186
Score = 82.6 bits (195), Expect = 2e-16
Identities = 38/64 (59%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVIS+ KAYHEQ SV EIT + FEP+N M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 146 bits (355), Expect = 9e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGAL
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (313), Expect = 1e-30
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F +YP+PQVST+VVEPYN
Sbjct: 164 KSKLGFTVYPSPQVSTSVVEPYN 186
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 146 bits (355), Expect = 9e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGAL
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVD+TEFQTNLVPYPRIHF L +Y
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSY 272
Score = 130 bits (313), Expect = 1e-30
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGK
Sbjct: 104 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL F +YP+PQVST+VVEPYN
Sbjct: 164 KSKLGFTVYPSPQVSTSVVEPYN 186
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M K DPRHGKYM CC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G L
Sbjct: 188 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQL 247
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 248 NSDLRKLAVNLIPFPRLHFFMVGF 271
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 103 AKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 162
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 163 RMMLTFSVFPSPKVSDTVVEPYN 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 320
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G L
Sbjct: 188 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQL 247
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 248 NSDLRKLAVNLIPFPRLHFFMVGF 271
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 103 AKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 162
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 163 RMMLTFSVFPSPKVSDTVVEPYN 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRG 320
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ + F+++P+P+VS VVEPYN
Sbjct: 162 RMMMTFSVFPSPKVSDTVVEPYN 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + LSV E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRG 319
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 77.4 bits (182), Expect = 8e-15
Identities = 34/83 (40%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ + F+++P+P+VS VVEPYN
Sbjct: 162 RMMMTFSVFPSPKVSDTVVEPYN 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + LSV E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRG 319
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 77.4 bits (182), Expect = 8e-15
Identities = 34/83 (40%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ + F+++P+P+VS VVEPYN
Sbjct: 162 RMMMTFSVFPSPKVSDTVVEPYN 184
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 162 RMMLTFSVFPSPKVSDTVVEPYN 184
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRG 319
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 162 RMMLTFSVFPSPKVSDTVVEPYN 184
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRG 319
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 162 RMMLTFSVFPSPKVSDTVVEPYN 184
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G L
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + NL+P+PR+HF +V +
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGF 270
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ L F+++P+P+VS VVEPYN
Sbjct: 162 RMMLTFSVFPSPKVSDTVVEPYN 184
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ S + L+V E+T ++ N M +DPRHG+Y+ + RG
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRG 319
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
LT ++DC ++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +
Sbjct: 190 LTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYM 249
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTYGQSSLPRR 531
N DL +L+P PR HF + Y ++ R+
Sbjct: 250 NNDLVGLLASLIPTPRCHFLMTGYTPLTVERQ 281
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 193
Y GK + + ++D I + AD L+GF++ H L+E L+ Y KK
Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
Query: 194 EFAIYP-APQVSTAVVEPYN 250
++++P + S VV+PYN
Sbjct: 168 TYSVFPNQMETSDVVVQPYN 187
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
LT ++DC ++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +
Sbjct: 190 LTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYM 249
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTYGQSSLPRR 531
N DL +L+P PR HF + Y ++ R+
Sbjct: 250 NNDLVGLLASLIPTPRCHFLMTGYTPLTVERQ 281
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 193
Y GK + + ++D I + AD L+GF++ H L+E L+ Y KK
Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
Query: 194 EFAIYP-APQVSTAVVEPYN 250
++++P + S VV+PYN
Sbjct: 168 TYSVFPNQMETSDVVVQPYN 187
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 399 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLP 494
L C RRR GP RV + LPPYP P
Sbjct: 97 LQRCIIARRRRDRVGPVRVEN---TLPPYPPP 125
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 130 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYD 32
+G TEGVED S LV D ++ QI D
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRD 641
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 513
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 478 PRIHFPLVTYGQSSLPRRPT-MNSFPSPRSQTHASSPP 588
P + FP T+G LP +P M PSP HA PP
Sbjct: 323 PGVVFPTTTHG-LGLPEQPVYMIPSPSPSPVYHAPPPP 359
>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 424
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 373 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYGQSS--LPRRPTMNS 546
+RL+ TA L D +L D E N +P H P YG SS RRP MN+
Sbjct: 8 DRLVTSFPLLDTADLFQDLSLGSDANEVPMNFTKHPYGHAP---YGASSHGSERRPNMNA 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,042
Number of Sequences: 28952
Number of extensions: 325629
Number of successful extensions: 1067
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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