Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0247
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59KL8 Cluster: Putative uncharacterized protein RLR1; ...    35   1.7  
UniRef50_A0CCV5 Cluster: Chromosome undetermined scaffold_169, w...    34   3.8  

>UniRef50_Q59KL8 Cluster: Putative uncharacterized protein RLR1;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein RLR1 - Candida albicans (Yeast)
          Length = 1608

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 384 YFSALKSSSVAGVNIHSALIFIFRDNKIRASNIAIH 491
           +F  L S +V+  NIH  L  +FRDNKI+   +A+H
Sbjct: 78  FFQVLNSFAVSK-NIHDLLHLLFRDNKIKIETLALH 112


>UniRef50_A0CCV5 Cluster: Chromosome undetermined scaffold_169, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_169, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2328

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 231  IMSISVTKRLHCLLLFVNVCFSLIGILEIPFVFPRVY*IFXXXXXXXXXHNYFSALKSSS 410
            ++ +  T+ L  +++ +N+ F+ +GIL I  VF R+Y            +  FS   SS 
Sbjct: 2120 VLQLKYTRNLDFVIIIINIAFAYLGILFIVTVF-RLYKFVCSQHPILYENKQFSYYYSSL 2178

Query: 411  VAGVNIHSAL 440
              G+N +  L
Sbjct: 2179 YEGINTNKNL 2188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,610,410
Number of Sequences: 1657284
Number of extensions: 11351126
Number of successful extensions: 20452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20451
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)