Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0247
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.5  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 168 KLHWPFDCRVGHRCPTRRTEVIMSISVTKRLHCLLLF--VNVCFSLIGILEIPFV 326
           KL W F  R GH C     + I++  ++ R H    +  +N C S + +L  P V
Sbjct: 58  KLWWEFCQRNGHNCLDFTVQNILTF-LSCRFHQGASYNTLNTCRSALALLLSPEV 111


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 621 LELCPYCKKNIKVPLVLRE*IQSH 692
           L  CP C K     LVL++ I+ H
Sbjct: 194 LHQCPVCHKKFTNALVLQQHIRLH 217


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 216 RRTEVIMSISVTKRLHCLLLFVNVCFSLIGILEIPFVFPRVY 341
           RR      +S+T  +H L L  +  F++  +   PF+   V+
Sbjct: 54  RRIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVH 95



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 241 FLLLSASIAFYCLLMYVL 294
           F++ +  + FYC+L+ +L
Sbjct: 219 FIIFTIHLLFYCVLIILL 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,937
Number of Sequences: 336
Number of extensions: 3238
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)