Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0247
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   1.9  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   7.8  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 239 RHNYFSAPRRAPVTYTTVKGPMQFFSCIICEVFLTSK 129
           R NYF   +R P  + +  G + F  C++  +  TS+
Sbjct: 486 RENYFKLKKRDPQQFRSASGRLGFMVCLLEILSFTSR 522


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 494 CQTVIFETRIKSSNFFDRETIITPI*KYLTYLA 592
           C T+I  +  K+ NFF  ET +  I   ++YLA
Sbjct: 649 CFTIISTSNNKNDNFFKAETALLIIGYTISYLA 681


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 186 QRANAIFLMHNMRSFFDFE-IMNFV 115
           +RA +I   HN++S FD E I  FV
Sbjct: 887 ERATSIMTKHNLKSSFDIEAIKEFV 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,544
Number of Sequences: 5004
Number of extensions: 51529
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)