Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0247
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0119 - 13644142-13644364,13645639-13645682                       29   3.5  
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483...    28   8.1  

>07_03_0119 - 13644142-13644364,13645639-13645682
          Length = 88

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 268 RQWRRLVTEIDIITSVRRVGH 206
           ++W+RL+T  DIIT+ RR+G+
Sbjct: 10  QRWQRLLTPEDIITTPRRMGY 30


>11_04_0450 -
           17847676-17847841,17848024-17848131,17848223-17848377,
           17848471-17848560,17848650-17848748,17848862-17848928,
           17849028-17849124,17849357-17849492,17849579-17849634,
           17849718-17849801,17849909-17850125
          Length = 424

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 615 LKWVNCMNAKYVRYFYIGVII 553
           LKW  CM AK V Y+Y G+++
Sbjct: 274 LKW-KCMEAKAVAYYYHGLVL 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,889
Number of Sequences: 37544
Number of extensions: 297868
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)