Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0246
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 169 9e-43
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 169 9e-43
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 169 9e-43
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 169 9e-43
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 169 2e-42
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 169 2e-42
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 165 1e-41
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 110 8e-25
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 108 2e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 108 2e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 108 2e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 7e-24
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 106 1e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 106 1e-23
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 105 2e-23
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 101 3e-22
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 73 2e-13
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 72 3e-13
At4g38980.1 68417.m05523 expressed protein 32 0.25
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 30 1.0
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 2.3
At4g37190.1 68417.m05265 expressed protein 28 4.1
At5g58670.1 68418.m07351 phosphoinositide-specific phospholipase... 28 5.4
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 28 5.4
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At5g11040.1 68418.m01290 expressed protein weak similarity to hy... 27 7.1
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 27 7.1
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 27 7.1
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 7.1
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 9.4
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 9.4
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 9.4
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 9.4
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 9.4
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C... 27 9.4
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 169 bits (412), Expect = 9e-43
Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 137 bits (331), Expect = 6e-33
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F +YP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPSP 175
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 169 bits (412), Expect = 9e-43
Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 137 bits (331), Expect = 6e-33
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F +YP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPSP 175
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 169 bits (412), Expect = 9e-43
Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 138 bits (334), Expect = 3e-33
Identities = 55/63 (87%), Positives = 62/63 (98%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F +YP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPSP 175
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 169 bits (412), Expect = 9e-43
Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 138 bits (334), Expect = 3e-33
Identities = 55/63 (87%), Positives = 62/63 (98%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F +YP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPSP 175
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 169 bits (410), Expect = 2e-42
Identities = 79/104 (75%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 120 bits (288), Expect = 1e-27
Identities = 48/63 (76%), Positives = 56/63 (88%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F IYP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTIYPSP 175
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 169 bits (410), Expect = 2e-42
Identities = 79/104 (75%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F + + PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 120 bits (288), Expect = 1e-27
Identities = 48/63 (76%), Positives = 56/63 (88%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VDYGKKSKL F IYP+P
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTIYPSP 175
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 165 bits (402), Expect = 1e-41
Identities = 77/104 (74%), Positives = 88/104 (84%), Gaps = 2/104 (1%)
Frame = +1
Query: 214 FQHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 393
F F S Q PRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 394 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--GLGSL 519
T+G+EIVD L+R+RKLAD CTGLQGFL+F++ GGGT GLGSL
Sbjct: 109 TVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 114 bits (275), Expect = 4e-26
Identities = 45/63 (71%), Positives = 55/63 (87%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 251 HDP 259
H P
Sbjct: 61 HVP 63
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GFTSLLMERLFVDYGKKSKLEFAIYPAP 593
G SLL+ERL VD+GKKSKL F IYP+P
Sbjct: 148 GLGSLLLERLSVDFGKKSKLGFTIYPSP 175
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (264), Expect = 8e-25
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 241
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 242 AGKHDP 259
G++ P
Sbjct: 56 CGRYVP 61
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 108 bits (260), Expect = 2e-24
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 251 HDP 259
P
Sbjct: 59 FVP 61
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (260), Expect = 2e-24
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 251 HDP 259
+ P
Sbjct: 59 YVP 61
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 108 bits (260), Expect = 2e-24
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 122 RKEAENCDCLQGFQVCHSLGGGTGSG 147
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 251 HDP 259
+ P
Sbjct: 60 YVP 62
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (256), Expect = 7e-24
Identities = 45/86 (52%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 122 RKEAENCDCLQGFQVCHSLGGGTGSG 147
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 251 HDP 259
+ P
Sbjct: 60 YVP 62
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 106 bits (254), Expect = 1e-23
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 251 HDP 259
P
Sbjct: 59 FVP 61
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 106 bits (254), Expect = 1e-23
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 251 HDP 259
P
Sbjct: 59 FVP 61
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 105 bits (253), Expect = 2e-23
Identities = 45/86 (52%), Positives = 61/86 (70%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ C LQGF + HS GGGTG G
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 251 HDP 259
+ P
Sbjct: 59 YVP 61
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 101 bits (243), Expect = 3e-22
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 435
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 436 RKLADQCTGLQGFLIFHSFGGGTGLG 513
RK A+ LQGF + HS GGGTG G
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSG 146
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +2
Query: 71 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 250
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 251 HDP 259
+ P
Sbjct: 59 YVP 61
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLD 429
PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMD 120
Query: 430 RIRKLADQCTGLQGFLIFHSFGGGTGLGSLPY 525
I + AD L+GF++ HS GGTG G Y
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +2
Query: 74 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 229
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLD 429
PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMD 120
Query: 430 RIRKLADQCTGLQGFLIFHSFGGGTGLGSLPY 525
I + AD L+GF++ HS GGTG G Y
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +2
Query: 74 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 229
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At4g38980.1 68417.m05523 expressed protein
Length = 280
Score = 32.3 bits (70), Expect = 0.25
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Frame = -2
Query: 492 EGVEDQESLQTGTLVSELADSVQNQIY--DFLS----NXXXXXXXXXGRIFLTSNKLFWM 331
E +E+ S+ G E SV +Q++ DF+S + + +TS ++F +
Sbjct: 156 ESIEEDGSVSNGEAKEEKPASVSSQVFKDDFMSTYVEDNAEDCNVTEDPVKVTSQEIFKV 215
Query: 330 KQLSVCASAD----LINNSRFKIDEDSTGSCLPAPVSLKKVLKESS 205
L V D L+ + +DE ST LP P++ +V+ E S
Sbjct: 216 WDLEVVGDNDEEDGLVLQLKKALDESSTVQPLPQPLNDDQVVSEKS 261
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 294 NNSRFKIDEDSTGSCLPAPVSLKKVLKESSPPPM 193
N R K S+ S L APV L + SSPPP+
Sbjct: 38 NPKRLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 240 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 115
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +1
Query: 217 QHFLQRDRSWQARPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 396
+H + ++++ + + + L+ V E T + +HP+ L ++ A +Y
Sbjct: 125 EHVVGKEKAKEIEDKDIVGCLDEEV--ECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYG 182
Query: 397 IGKEIV------DLVLDRIRKLADQCTGLQGFLIFHSFGGG 501
IGK++ + + DR+R ++C +QG GG
Sbjct: 183 IGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVDDSGG 223
>At5g58670.1 68418.m07351 phosphoinositide-specific phospholipase C
(PLC1) identical to phosphoinositide specific
phospholipase C [Arabidopsis thaliana] GI:902923
Length = 561
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 267 DSTGSCLPAPVSLK-KVLKESSPPPMVLSVGI 175
D T C P+P SLK K+L + PP L I
Sbjct: 228 DETTECFPSPESLKNKILISTKPPKEYLQTQI 259
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 156 ASSLMARCPQTRPSGVETILSTLSSARPELASTTP 260
AS+ +R P + + TI ++S++ PEL+S TP
Sbjct: 862 ASNKKSRVPLPKANEKSTISRSVSTSSPELSSNTP 896
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 177 CPQTRPSGVETILSTLSSARPELASTTPCCLRRS*TYCC**GPHWH 314
CP R SG+ + + LS++ E ST CC++ +C WH
Sbjct: 242 CPNPRCSGLMS-KTELSTSTEEDVSTRTCCVKCGEPFCINCKVPWH 286
>At5g11040.1 68418.m01290 expressed protein weak similarity to
hypercellular protein [Aspergillus nidulans] GI:9309269
Length = 1186
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 117 SVMPAGS-FTAWSTASSLMA-RCPQTRPSGVETILSTLSSARPELASTTPC 263
S + AG AWS A+ L+ P PSG + ++L+++ L S T C
Sbjct: 458 SAVRAGDPLAAWSAAARLLRWHYPLITPSGQNGLANSLANSADRLPSGTRC 508
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -1
Query: 439 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 350
C P PN + PF+W ++ + ++P++
Sbjct: 136 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 165
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +2
Query: 158 IQPDGQMPTDKTIGGGDDSF---NTFFSETGAGKHD 256
I+PD PT++ G G D N F E GK D
Sbjct: 360 IRPDSSSPTERINGNGSDKMMADNEFADEGNKGKMD 395
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -1
Query: 439 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 350
C P PN + PF+W ++ + ++P++
Sbjct: 153 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 182
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 235 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 65
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 235 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 65
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 235 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 65
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 235 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 65
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 182 WASGHQAGCRAPGSKAPSRHYRSGLR 105
W+SGHQ CR G + ++GLR
Sbjct: 90 WSSGHQRNCRDYGITTLTPSAKNGLR 115
>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GI:2582800
from [Medicago sativa]
Length = 380
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 147 WSTASSLMARCPQTRPSGVETILSTLSSARPELASTTPCCLRRS*TYC 290
+S +SSL P ET+ +LS P ++ST+P + +C
Sbjct: 13 FSPSSSLFCNKPLNTSPAHETLTLSLSHLNPPVSSTSPSAASPTSPFC 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,448
Number of Sequences: 28952
Number of extensions: 313150
Number of successful extensions: 978
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -