Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0245
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 151 1e-37
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 6e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 66 5e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 66 7e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 65 9e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 4e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.004
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 4.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 6.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 151 bits (365), Expect = 1e-37
Identities = 68/74 (91%), Positives = 72/74 (97%)
Frame = -1
Query: 506 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 327
GTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 326 YDESGPSIVHRKCF 285
YDESGP IV+RKCF
Sbjct: 362 YDESGPGIVYRKCF 375
Score = 103 bits (246), Expect = 4e-23
Identities = 46/58 (79%), Positives = 50/58 (86%)
Frame = -2
Query: 682 PTGQVITMGNERFRCPKALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 509
P GQVIT+GNERFR P+ALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+S
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMS 300
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.3 bits (162), Expect = 6e-13
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 6/79 (7%)
Frame = -1
Query: 506 GTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWIS 336
GT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS
Sbjct: 355 GTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWIS 413
Query: 335 KQEYDESGP---SIVHRKC 288
+QEY+E G +++ ++C
Sbjct: 414 RQEYEEHGSDRLALIEKRC 432
Score = 27.9 bits (59), Expect(2) = 0.017
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 592 GIHETTYNSIMKCDVDIRKDLYANTVL 512
GI + N I +CDVDIR L N ++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIV 352
Score = 25.4 bits (53), Expect(2) = 0.017
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 685 FPTGQVITMGNERFRCPKALFQP 617
FP G + G ER++ P+ LF P
Sbjct: 266 FPDGSRMMFGAERYQIPEHLFVP 288
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = -2
Query: 688 TFPTGQVITMGNERFRCPKALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 509
T P G+VI +G+ER+ CP+ LFQP +G E G+ E +++I DVDIRK LY VLS
Sbjct: 241 TLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLS 300
Score = 49.2 bits (112), Expect = 6e-07
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 12/77 (15%)
Frame = -1
Query: 506 GTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-L 363
G++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA +
Sbjct: 302 GSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIM 361
Query: 362 STFQQMWISKQEYDESG 312
+ MW+SK E++E G
Sbjct: 362 AQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 65.7 bits (153), Expect = 7e-12
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = -1
Query: 506 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 327
G+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +E
Sbjct: 307 GSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEE 366
Query: 326 YDESGPSIVHRKCF 285
Y ++ +++ R+ F
Sbjct: 367 Y-KNDQNVIFRRRF 379
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = -2
Query: 706 PQKVLRTFPTGQVITMGNERFRCPKALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 527
PQ P Q IT+G E F P+ LF P +G EA G+H + SI+ D+D+R LY
Sbjct: 240 PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLY 299
Query: 526 ANTVLS 509
+N VLS
Sbjct: 300 SNIVLS 305
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 65.3 bits (152), Expect = 9e-12
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = -1
Query: 515 IVRGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 342
+ GT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 341 ISKQEYDESG 312
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = -2
Query: 685 FPTGQVITMGNERFRCPKALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKD 533
FP G G ERFR + LF PSF + G+HE Y SI+ CD ++R
Sbjct: 283 FPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSP 342
Query: 532 LYANTVLS 509
L N V++
Sbjct: 343 LLNNIVVT 350
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = -1
Query: 512 VRGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 333
+ G +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 326 IGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITR 384
Query: 332 QEYDESGPSIVHRK 291
EY E G +I+ RK
Sbjct: 385 SEYSEHGANIMTRK 398
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 673 QVITMGNERFRCPKALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV 515
QV+ + NERF P+ LF PS + + GI E S+ +I+ L N V
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVV 324
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -1
Query: 533 LVRQHRIVRGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 354
LV I G PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 353 QQMWISKQEYDESGPSIV 300
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 431 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 294
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 667 ITMGNERFRCPKALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLS 509
I +G ERF P+ F P + + E N + +D+RK LY N VLS
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLS 333
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 515 IVRGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 345
IV G +PG A +++ I + + I +I PP + ++ W G I + ++
Sbjct: 535 IVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSEL 594
Query: 344 WISKQEYDESGPSIVHRK 291
WI ++ G ++ K
Sbjct: 595 WIKNSDWKMLGSRVLQYK 612
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -2
Query: 334 NKSTTSLAPPLYTGSASKRTARRCLQHPRPAAQFRLVISVNLIVRKI 194
N+S +SL+ Y+ SK+T+ L R + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 392 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 291
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 713 PGPNSPYRESYYNSLGRVLQ 772
PGPN+P+RE L +VL+
Sbjct: 892 PGPNNPHREKTQEGLNKVLE 911
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 400 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQHPRPAAQFRLVI 221
TP + PPS+PS++ R S ++ APP ++ + PRP A +
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 220 SVN 212
++N
Sbjct: 283 AIN 285
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 480 GDSRVHGGTTDNTVLAYKSLRMSTSHFMM 566
GDSR H TD ++L+ S+R S +++
Sbjct: 277 GDSRTHSAETDRSLLSAMSVRNSRMPYIV 305
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 397 PYGSVDRSS--PPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQHPRPAAQFRLV 224
P+ + D SS P +LP+ GS N + T + P + +++K + P+P + L
Sbjct: 532 PFSATDISSVQPTNLPN---GSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLS 588
Query: 223 ISVNLIV 203
NLI+
Sbjct: 589 AVGNLII 595
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 467 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 357
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,942
Number of Sequences: 5004
Number of extensions: 73295
Number of successful extensions: 229
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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