Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0245
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             123   2e-30
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  123 bits (297), Expect = 2e-30
 Identities = 55/58 (94%), Positives = 57/58 (98%)
 Frame = -2

Query: 682 PTGQVITMGNERFRCPKALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 509
           P GQVIT+GNERFRCP+ALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS
Sbjct: 18  PDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 75



 Score =  120 bits (289), Expect = 2e-29
 Identities = 56/57 (98%), Positives = 57/57 (100%)
 Frame = -1

Query: 506 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 336
           GTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 77  GTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 702 KKSYE-LSRRVRSSPWETKDSVAQRLSSNPRSWV 604
           K++Y+ +SR    +P++  DSV+   SS+  +W+
Sbjct: 405 KENYQTMSRDPARTPFQWDDSVSAGFSSSSNTWL 438


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 702 KKSYE-LSRRVRSSPWETKDSVAQRLSSNPRSWV 604
           K++Y+ +SR    +P++  DSV+   SS+  +W+
Sbjct: 405 KENYQTMSRDPARTPFQWDDSVSAGFSSSSNTWL 438


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 698 FLRGGPGPNSPY 733
           FL+G PG NSPY
Sbjct: 25  FLQGFPGKNSPY 36


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 451 RAVISFCIRSAIPGYMVVPRTIRCWRTS 534
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 451 RAVISFCIRSAIPGYMVVPRTIRCWRTS 534
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 451 RAVISFCIRSAIPGYMVVPRTIRCWRTS 534
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 11  RKVLGFGYESNVK-YQVVPSALQMWSTS 37


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 622 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSV 506
           + +FLG+    +   +YN +   D  + KDL+   +L +
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDL 366


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 722 WVRAPPSKSLTNFPDGSGHHH 660
           WV   P+ S+TN+  G+  +H
Sbjct: 336 WVANVPNGSVTNWVSGNHDNH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,448
Number of Sequences: 438
Number of extensions: 5829
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)