Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0244
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    28   1.3  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   4.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   7.0  

>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 551 LTAQPAIQSNNEQINKVPCSYHQ 619
           L+A+P ++SN E++ + P SY Q
Sbjct: 104 LSAKPTVESNTEELEEEPPSYEQ 126


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 153 IPKTKSLKLNCFLLIDFIKLRFLKKRHFFRIY 58
           +PK+  +  N  L +DF+K R  ++ + +RIY
Sbjct: 261 LPKSVVISCNMKLNLDFLKERIWEELNLYRIY 292


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 456 QRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQ 355
           +  EK+ RE E+  A   +   ++E++RIRL++Q
Sbjct: 107 REQEKKLREQEKIAAKKMKELEKLEKERIRLQEQ 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,783
Number of Sequences: 5004
Number of extensions: 64977
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)