Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0244
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_56882| Best HMM Match : DUF1319 (HMM E-Value=2.6) 29 4.2
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16) 29 4.2
SB_3654| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.57) 29 4.2
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0) 29 5.6
SB_10140| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 29 5.6
SB_47806| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 28 9.8
>SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 125 FNFNDFVLGI-SLKSFLFIYCPCRQTCIRPTKLTILRCFTSN 247
F F++F+ + SL +F F +C TC++PTK F S+
Sbjct: 39 FYFDEFLPYVKSLITFCFYFCIPHDTCMKPTKFGCHTIFLSD 80
>SB_56882| Best HMM Match : DUF1319 (HMM E-Value=2.6)
Length = 192
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 537 PTRTKIILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQ 358
P R ILL + + K+ L+R+EKR R IE A + E R + +I ++
Sbjct: 11 PNREFPILLKMASGATESVLQKISDTLERVEKRVRVIENSVACLEELRKHVNNMKIECEK 70
>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
Length = 453
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 453 RMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVI 349
++EK + +EE +E Q EE+R RL++Q+I
Sbjct: 61 KLEKEHQRMEEQQRQQQEALKQAEEERARLREQLI 95
>SB_3654| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.57)
Length = 247
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 537 PTRTKIILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQ 358
P R ILL + + K+ L+R+EKR R IE A + E R + +I ++
Sbjct: 23 PNREFPILLKMASGATESVLQKISDTLERVEKRVRVIENSVACLEELRQDVNNMKIECEK 82
>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 1025
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 555 VSFLPLPTRTKIILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEED 376
V L P R ILL + + K+ L+R+EKR R IE A + E R +
Sbjct: 213 VKNLLAPNREFPILLKMASGATESVLQKICDTLERVEKRVRVIENSVACLEELRKDVNNM 272
Query: 375 RIRLKQ 358
+I ++
Sbjct: 273 KIECEK 278
>SB_10140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 339 IVSGPSLFLHMSGSLIING*PYGIMRYDCL 250
I G L L++SG+ +I G PY + YD L
Sbjct: 149 IRGGAYLILNVSGATVIRGGPYSRIHYDSL 178
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 477 LKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN 346
L+V + + +E++ RE+ E ++R + Q EE+ I K++ N
Sbjct: 677 LRVFEQIDEVERKKRELREREVLMRAAKLQQEEEEIIRKREANN 720
>SB_47806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 637 SLGKHFILSFNWLSISEIKITNLFSYFIDWLAAKLLKIWWISFFYNSIL 783
SLG +L + LS +EI + SY+I WL L+ W F S +
Sbjct: 12 SLGAVLLLPMSILS-NEILVMYPNSYYIKWLNGSLIHGMWNQIFLGSYI 59
>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 637 SLGKHFILSFNWLSISEIKITNLFSYFIDWLAAKLLKIWWISFFYNSIL 783
SLG +L + LS +EI + SY+I WL L+ W F S +
Sbjct: 12 SLGAVLLLPMSILS-NEILVMYPNSYYIKWLNGSLIHGMWNQIFLGSYI 59
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 625 LKLMVRTWNLIYLFIIGLNSGLSGEFSTLTYTYQNYIA 512
L +M W ++ LF+ +G SG F+ +T YIA
Sbjct: 128 LLVMYLKWPILVLFVGSAFTGFSGFFTVMTQASMAYIA 165
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 429 IEE*HAMIRERRNQMEEDRIRLKQQ 355
IEE HA+ ++ +EE+++RLK++
Sbjct: 584 IEEVHAVADQKERLLEEEKVRLKEE 608
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,387,833
Number of Sequences: 59808
Number of extensions: 430618
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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