Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0244
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023959-1|ABB36463.1|  876|Drosophila melanogaster AT19777p pro...    33   0.58 
AE014134-544|AAF51156.1|  874|Drosophila melanogaster CG17258-PA...    33   0.58 
L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...    31   1.8  
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...    31   1.8  
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...    31   1.8  
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...    31   1.8  
X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...    29   9.5  

>BT023959-1|ABB36463.1|  876|Drosophila melanogaster AT19777p
           protein.
          Length = 876

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 468 PQFLQRMEKRAREIEE*HAMIRERRNQMEEDR 373
           P+FLQ M++RA E    H   R+RR Q E +R
Sbjct: 611 PRFLQHMQERATERSMRHEQARQRRAQAEAER 642


>AE014134-544|AAF51156.1|  874|Drosophila melanogaster CG17258-PA
           protein.
          Length = 874

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 468 PQFLQRMEKRAREIEE*HAMIRERRNQMEEDR 373
           P+FLQ M++RA E    H   R+RR Q E +R
Sbjct: 609 PRFLQHMQERATERSMRHEQARQRRAQAEAER 640


>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = -2

Query: 519 ILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN*N 340
           + +T S + +++   K  Q L    +R RE+    AM+++R N  E  RI L  + +   
Sbjct: 41  VRVTPSRTEIIIMATKTQQVLGEKGRRIRELT---AMVQKRFN-FETGRIELYAEKVAAR 96

Query: 339 ----IVSGPSLFLHMSGSLIING*PYGIMRY 259
               I    SL   ++G L +    YG++RY
Sbjct: 97  GLCAIAQAESLRYKLTGGLAVRRACYGVLRY 127


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = -2

Query: 519 ILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN*N 340
           + +T S + +++   K  Q L    +R RE+    AM+++R N  E  RI L  + +   
Sbjct: 48  VRVTPSRTEIIIMATKTQQVLGEKGRRIRELT---AMVQKRFN-FETGRIELYAEKVAAR 103

Query: 339 ----IVSGPSLFLHMSGSLIING*PYGIMRY 259
               I    SL   ++G L +    YG++RY
Sbjct: 104 GLCAIAQAESLRYKLTGGLAVRRACYGVLRY 134


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = -2

Query: 519 ILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN*N 340
           + +T S + +++   K  Q L    +R RE+    AM+++R N  E  RI L  + +   
Sbjct: 41  VRVTPSRTEIIIMATKTQQVLGEKGRRIRELT---AMVQKRFN-FETGRIELYAEKVAAR 96

Query: 339 ----IVSGPSLFLHMSGSLIING*PYGIMRY 259
               I    SL   ++G L +    YG++RY
Sbjct: 97  GLCAIAQAESLRYKLTGGLAVRRACYGVLRY 127


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = -2

Query: 519 ILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN*N 340
           + +T S + +++   K  Q L    +R RE+    AM+++R N  E  RI L  + +   
Sbjct: 41  VRVTPSRTEIIIMATKTQQVLGEKGRRIRELT---AMVQKRFN-FETGRIELYAEKVAAR 96

Query: 339 ----IVSGPSLFLHMSGSLIING*PYGIMRY 259
               I    SL   ++G L +    YG++RY
Sbjct: 97  GLCAIAQAESLRYKLTGGLAVRRACYGVLRY 127


>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 498 SSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVIN*N----IVS 331
           + +++   K  Q L    +R RE+    AM+++R N  E  RI L  + +       I  
Sbjct: 48  TEIIIMATKTQQVLAEKGRRIRELT---AMVQKRFN-FETGRIELYAEKVAARGLCAIAQ 103

Query: 330 GPSLFLHMSGSLIING*PYGIMRY 259
             SL   ++G L +    YG++RY
Sbjct: 104 AESLRYKLTGELAVRRACYGVLRY 127


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,369,162
Number of Sequences: 53049
Number of extensions: 629893
Number of successful extensions: 1481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)