Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0244
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    28   8.7  
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    28   8.7  

>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 543 PLPTRTKIILLTFSESSLVLHCLKVPQFLQRMEKRAREIEE*HAMIRERRNQMEEDR 373
           P+ TRT+ I+    E+ L   C K  +     E+  RE EE     RERR + E+ R
Sbjct: 131 PIRTRTEPIVTLADETELTGGCQKNSE--NEKERNRREREEQQTKERERRLEEEKQR 185


>AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical
           protein Y38C1BA.1 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +1

Query: 643 GKHFILSFNWLSISEIKITNL-FSYFIDW------LAAKLLKIWWISFFYNSI 780
           G HF+L+F ++ +  I+   +    F+ W      +   L  IWW+ F Y  I
Sbjct: 12  GTHFLLTFQFIVLDGIRDMFMNIRRFVRWYTLDYDMGHALCNIWWLWFIYQCI 64


>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 459 LQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVI 349
           L R+E + R ++E     RE RN++E +R  L  QVI
Sbjct: 35  LTRLEDKIRLLQEDLESERELRNRVERERADLSVQVI 71


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 459 LQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVI 349
           L R+E + R ++E     RE RN++E +R  L  QVI
Sbjct: 35  LTRLEDKIRLLQEDLESERELRNRVERERADLSVQVI 71


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 459 LQRMEKRAREIEE*HAMIRERRNQMEEDRIRLKQQVI 349
           L R+E + R ++E     RE RN++E +R  L  QVI
Sbjct: 51  LTRLEDKIRLLQEDLESERELRNRVERERADLSVQVI 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,299
Number of Sequences: 27780
Number of extensions: 356160
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)