Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0244
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26665.2 68414.m03248 expressed protein                             29   4.6  
At1g26665.1 68414.m03247 expressed protein                             29   4.6  
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00...    28   8.0  

>At1g26665.2 68414.m03248 expressed protein
          Length = 189

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 764 NEIHQIFKSFAASQSMK*EKRLVIFISEIDSQLKLKIKC---LPNELKIPEVDGKNMEPY 594
           +++H    SF  +  +   +RL   + E+D+  KL  KC   +P E+     DGKN + +
Sbjct: 54  HQLHLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEF 113


>At1g26665.1 68414.m03247 expressed protein
          Length = 189

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 764 NEIHQIFKSFAASQSMK*EKRLVIFISEIDSQLKLKIKC---LPNELKIPEVDGKNMEPY 594
           +++H    SF  +  +   +RL   + E+D+  KL  KC   +P E+     DGKN + +
Sbjct: 54  HQLHLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEF 113


>At1g10890.1 68414.m01251 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 592

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 456 QRMEKRAREIEE*HAMIRE--RRNQMEEDRIRLKQQVIN*NIVSGPSLFLHMSGSL 295
           ++ E+R RE+EE      E  RR + EE+  RLKQ  +     S P L   +S  +
Sbjct: 179 RKEEERYRELEELQRQKEEAMRRKKAEEEEERLKQMKLLGKNKSRPKLSFALSSKM 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,197
Number of Sequences: 28952
Number of extensions: 316448
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)