Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0242
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 3e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 3e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 185 3e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 185 3e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 7e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 5e-21
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 90 1e-18
SB_54| Best HMM Match : Actin (HMM E-Value=0) 84 1e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 83 2e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 61 8e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 8e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 51 8e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 48 1e-05
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.53
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.70
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 29 3.7
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 28 8.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 185 bits (451), Expect = 3e-47
Identities = 102/153 (66%), Positives = 104/153 (67%), Gaps = 5/153 (3%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 436 NREKMTQIMFETFNTPAMYVAIQA-----GSRCTRPVVPPVSCWTPATVSSTPCPSTRDT 600
NREKMTQIMFETFN+PAMYVAIQA S T +V TV P
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV-----PIYEGY 170
Query: 601 HFPTPFCVWTWPVVTLTDYLMKILTRARVLVTT 699
P LTDYLMKILT TT
Sbjct: 171 ALPHAIIRLDLAGRDLTDYLMKILTERGYSFTT 203
Score = 112 bits (270), Expect = 2e-25
Identities = 51/54 (94%), Positives = 53/54 (98%)
Frame = +2
Query: 92 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 141 LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 185
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 185 bits (451), Expect = 3e-47
Identities = 102/153 (66%), Positives = 104/153 (67%), Gaps = 5/153 (3%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 55 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
Query: 436 NREKMTQIMFETFNTPAMYVAIQA-----GSRCTRPVVPPVSCWTPATVSSTPCPSTRDT 600
NREKMTQIMFETFN+PAMYVAIQA S T +V TV P
Sbjct: 115 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV-----PIYEGY 169
Query: 601 HFPTPFCVWTWPVVTLTDYLMKILTRARVLVTT 699
P LTDYLMKILT TT
Sbjct: 170 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 202
Score = 109 bits (263), Expect = 2e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +2
Query: 98 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 140 LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 185 bits (451), Expect = 3e-47
Identities = 102/153 (66%), Positives = 104/153 (67%), Gaps = 5/153 (3%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 55 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
Query: 436 NREKMTQIMFETFNTPAMYVAIQA-----GSRCTRPVVPPVSCWTPATVSSTPCPSTRDT 600
NREKMTQIMFETFN+PAMYVAIQA S T +V TV P
Sbjct: 115 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV-----PIYEGY 169
Query: 601 HFPTPFCVWTWPVVTLTDYLMKILTRARVLVTT 699
P LTDYLMKILT TT
Sbjct: 170 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 202
Score = 111 bits (266), Expect = 7e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +2
Query: 98 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 140 LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 185 bits (451), Expect = 3e-47
Identities = 102/153 (66%), Positives = 104/153 (67%), Gaps = 5/153 (3%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 436 NREKMTQIMFETFNTPAMYVAIQA-----GSRCTRPVVPPVSCWTPATVSSTPCPSTRDT 600
NREKMTQIMFETFN+PAMYVAIQA S T +V TV P
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV-----PIYEGY 170
Query: 601 HFPTPFCVWTWPVVTLTDYLMKILTRARVLVTT 699
P LTDYLMKILT TT
Sbjct: 171 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 203
Score = 117 bits (281), Expect = 1e-26
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = +2
Query: 92 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 141 LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (448), Expect = 6e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 436 NREKMTQIMFETFNTPAMYVAIQA 507
NREKMTQIMFETFN+PAMYVAIQA
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQA 139
Score = 112 bits (270), Expect = 2e-25
Identities = 49/54 (90%), Positives = 53/54 (98%)
Frame = +2
Query: 92 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/33 (84%), Positives = 30/33 (90%), Gaps = 2/33 (6%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYE--GYA 602
LSLYASGRTTGIV+DSGDGV HTVPIYE GY+
Sbjct: 141 LSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 111 bits (266), Expect = 7e-25
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +2
Query: 98 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 103 LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 147
Score = 74.5 bits (175), Expect = 8e-14
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 363
GDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 55 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 41.9 bits (94), Expect = 5e-04
Identities = 37/93 (39%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +1
Query: 436 NREKMTQIMFETFNTPAMYVAIQA-----GSRCTRPVVPPVSCWTPATVSSTPCPSTRDT 600
N + M +IMFETFN+PAMYVAIQA S T +V TV P
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV-----PIYEGY 132
Query: 601 HFPTPFCVWTWPVVTLTDYLMKILTRARVLVTT 699
P LTDYLMKILT TT
Sbjct: 133 ALPHAIIRLDLAGRDLTDYLMKILTERGYSFTT 165
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = +1
Query: 214 SGRDGRYGTEGLL*GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 390
S + G + L+ GDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 391 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 507
VLLTE PLNP NREKM ++MFE + +Y+AIQA
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQA 142
Score = 71.3 bits (167), Expect = 7e-13
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
L+LYA G TG+V+DSGDGV H P+YEG+ALPH RLD+AGRD
Sbjct: 144 LTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRD 188
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 110 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 208
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
LSLYASGRTTG+V DSGDGV H VPIYEGYALPHAILRLDLAGRD
Sbjct: 19 LSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRD 63
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 457 IMFETFNTPAMYVAIQA 507
IMFE FN+PA+YVAIQA
Sbjct: 1 IMFEAFNSPAVYVAIQA 17
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +1
Query: 343 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 507
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QA
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQA 2183
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
++LYASGRTTG V D GDGV HTVP+Y+GY LPHA R+DLAGRD
Sbjct: 2185 MALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRD 2229
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 116 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 217
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/48 (72%), Positives = 44/48 (91%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDPHR 653
LSLYA+GRTTG+VLD+GDGV H+VPIYEG+A+PH+I+R D+AGRD R
Sbjct: 166 LSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSR 213
Score = 64.9 bits (151), Expect = 6e-11
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = +1
Query: 391 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 507
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQA 164
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 61.3 bits (142), Expect = 8e-10
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +1
Query: 301 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 480
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 481 PAMYV 495
PA ++
Sbjct: 63 PAFFL 67
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +3
Query: 504 SRLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAG 638
S L+ +A+GR+ G+V+DSG VP+++GY L AI+R LAG
Sbjct: 71 SVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAG 115
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 101 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 217
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 86 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 232
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +3
Query: 510 LSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAG 638
LSLYASG T G+ L SG IYEG+ L H + L++ G
Sbjct: 770 LSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGG 812
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/51 (47%), Positives = 29/51 (56%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 408
GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 287 GDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 537 TGIVLDSGDGVFHTVPI 587
TG V+DSGDGV H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +3
Query: 537 TGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 644
TG V+DSGDGV H +P+ EGY + I + +AGRD
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD 97
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 217 GRDGRYGTEGLL*GDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 387
GR G + GL G++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 388 EEHPVLLTEAPLNPKANRE 444
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 214 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 98
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 256 GDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 372
GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 275 GDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +2
Query: 104 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYEEMR 265
++A LV+D G+ K GFA + APR++ P+ + + + + + +G D EE +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERRKLFIG--DQIEECK 282
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 189 GNTARGASSPAKPALHIPEPLSTT 118
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 565 VSSTPCPSTRDTHFPTPFCVWTWPVVTLTDYLMKILTRARVLVTTP 702
VSSTP + + H PTP C +PV T + L VL+ +P
Sbjct: 10 VSSTPSQMSAERHEPTPQCRLKFPVQTRHEPATNTLNTNLVLLQSP 55
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 189 GNTARGASSPAKPALHIPEPLSTT 118
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 189 GNTARGASSPAKPALHIPEPLSTT 118
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 262 HLLIRVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 119
+L+ R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 33 YLIYRLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 417 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 509
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +1
Query: 517 CTRPVVPPVSCWTPATVSSTPC-----PSTRDTHFP 609
CT+ +P +TP T TPC PST +H P
Sbjct: 859 CTKRYIPSAKRYTPCTERYTPCTKRYTPSTEPSHAP 894
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 451 TQIMFETFNTPAMYVAIQAGSRCTRPVVPPVSCWTPATVSSTP 579
+Q+ E +N P+ + + CT +P +TP T TP
Sbjct: 611 SQVNSERYNAPSQSPCTERYTPCTERYIPCTERYTPCTERYTP 653
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 517 CTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTP 615
C+RP PPV+ T +T SST +T T TP
Sbjct: 620 CSRPTTPPVTT-TKSTTSSTTKGTTASTTTSTP 651
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 525 SGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDPHR---LPHEDPHPSAGSCY 695
SG T SG ++ T + +GY I RDP R LP H AG+ +
Sbjct: 1425 SGNTLHDGGGSGGSIWITTSVVQGYGTVQVISSYGDISRDPGRAWLLPSSGDHALAGNQF 1484
Query: 696 YTAE 707
Y E
Sbjct: 1485 YQFE 1488
>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1254
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 484 AMYVAIQAGSRC--TRPVVPPVSCWTPATVSSTPCPSTRDTHFPT 612
A Y I +RC TRP P S P ++ +TR +H PT
Sbjct: 14 AYYQTISQSNRCVTTRPSHTPTSALLPDHLTRQQVRTTRPSHMPT 58
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 189 GNTARGASSPAKPALHIPEPLSTT 118
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 520 TRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPFCVW 627
T P P T TV T PS D F T C W
Sbjct: 1702 TNPWTTPAPSPTATTVGPTLAPSQWDCSFETNLCSW 1737
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 189 GNTARGASSPAKPALHIPEPLSTT 118
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 572 EDTVAGVQHDTGGTTGRVQREPAWMATYMAGVLNVSNMIWVIFSLLALGLRGASV 408
E T+A + T ++ R P W+ Y+ + + ++VIF L+ GLR ASV
Sbjct: 168 ESTLASIS--LACATTQLIRRPNWLKEYLREIRVICGPMYVIF--LSSGLRFASV 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,637,234
Number of Sequences: 59808
Number of extensions: 633299
Number of successful extensions: 2360
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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