Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0240
         (382 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   4.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   7.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 321 NEK*DAKPGLCC*GCANISS 380
           N K +  PG CC  C N +S
Sbjct: 718 NMKLEKVPGECCAICVNATS 737


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 177 DSPGLTSCLFVVRVAPPHQHGEWPRPV 97
           D P ++  L  + V     HG+W R V
Sbjct: 692 DVPEISKYLDFINVMTYDFHGQWERTV 718



 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 177 DSPGLTSCLFVVRVAPPHQHGEWPR 103
           D P ++S L  + +     HG+W R
Sbjct: 263 DVPAVSSYLDFINLMAYDFHGKWER 287


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 364 QP*QQSPGFASYFSLPTEAAATGR 293
           +P Q++P  ASY S+P   ++  R
Sbjct: 212 RPPQETPVLASYKSVPMSFSSPRR 235


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 352 QSPGFASYFSL 320
           Q+PGF +YF +
Sbjct: 449 QNPGFLAYFEI 459


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 140 VSPPHTNMASGPGRLTY 90
           +S P +  +  PG LTY
Sbjct: 72  ISSPSSTKSGSPGFLTY 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,829
Number of Sequences: 336
Number of extensions: 2189
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)