Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0240
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   4.0  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   4.0  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   5.3  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   5.3  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   5.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   7.0  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             24   9.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    24   9.3  

>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 341 LRILLLITDRSSSN-RASGYFIGLPS 267
           LR++  + D++S+N R   YF+G+P+
Sbjct: 130 LRLIRTLVDQASANGRVYVYFVGMPN 155


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 8   LKLYIYISSRDAAVCIELHDPMSASLSHTLTGRGH 112
           L L +Y S RDA  CI  H   +  LS       H
Sbjct: 87  LFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDH 121


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 248 PFPWNVGWAA 277
           P PWN+GWA+
Sbjct: 458 PGPWNLGWAS 467


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 101 GRGHSPCWCGGATRTTNRQDVSPGLSRWWKCPQVASETHA*LIQD 235
           GRG  P     A    N  D   G   WW  P+V +E ++  +QD
Sbjct: 412 GRGGIPNLNAAANIVIN--DWHAGRIEWWAEPEVINEKNSSEVQD 454


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   LKLYIYISSRDAAVCIELHDPMSASLSHTLTGR 106
           LK Y  + SRD  + + ++D   +SLS TL  R
Sbjct: 387 LKDYFRVISRDLLLLLGINDVPVSSLSATLADR 419


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 369 SRSPSNRAPASHPTSHYRQKQQQQGV 292
           S +PS+   ASH    YR K  Q  V
Sbjct: 46  SSNPSSNEKASHTNEEYRSKGNQSYV 71


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 PPFPGTWAGQPDEVPG 293
           PP  GTWA +P+ + G
Sbjct: 412 PPVMGTWAKEPNHLIG 427


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 375 KCSRSPSNRAPASHPTSHYRQ 313
           KC +    R P  HPTS Y Q
Sbjct: 429 KCPKKFVARPPVPHPTSLYSQ 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,125
Number of Sequences: 5004
Number of extensions: 33914
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)