Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0240
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0410 + 2928382-2930973 32 0.13
12_02_1125 - 26327433-26328239 32 0.18
08_02_0191 + 14041201-14043894,14044354-14044632 31 0.31
04_04_0868 + 28874332-28875747 29 0.94
03_04_0084 - 17153428-17153502,17154158-17154433 29 1.2
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 29 1.6
12_01_0338 - 2594680-2594796,2595079-2595147,2595233-2595338,259... 28 2.2
09_04_0350 + 16899076-16900164 28 2.2
04_04_0069 + 22506885-22508354 28 2.2
02_05_0011 + 24953472-24954506 28 2.2
01_06_1365 - 36690267-36692222 28 2.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 2.9
01_06_0751 + 31690411-31690443,31692900-31694240 28 2.9
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381... 27 3.8
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 27 3.8
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 27 5.0
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246... 27 5.0
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 27 5.0
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539... 27 6.6
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182... 27 6.6
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 27 6.6
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 6.6
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 27 6.6
09_04_0258 - 16175258-16176069,16176111-16176414 26 8.7
07_01_0516 - 3850252-3852870 26 8.7
03_02_0331 - 7527010-7529352 26 8.7
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 26 8.7
02_02_0338 + 9105725-9106581,9106950-9107091 26 8.7
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 26 8.7
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322... 26 8.7
>06_01_0410 + 2928382-2930973
Length = 863
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Frame = -1
Query: 214 CLARDLGAFPPSR*PRTNVL--------SVCRACRPPTPTWRVA 107
CL+ DLG S P T + SVCRA PP P WRVA
Sbjct: 350 CLSHDLGVNNLSLVPSTLEVPYHCFVLGSVCRASSPPVPLWRVA 393
>12_02_1125 - 26327433-26328239
Length = 268
Score = 31.9 bits (69), Expect = 0.18
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 313 EAAATGRPGTSSGCPAHVPGKGG 245
EA A G G S+ CP +PG+GG
Sbjct: 64 EAVAAGSGGGSTACPVRLPGRGG 86
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 31.1 bits (67), Expect = 0.31
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Frame = -1
Query: 214 CLARDLGAFPPSR*PRTNVL--------SVCRACRPPTPTWRVA 107
CL+ DLG S P T + SVCR PP P WRVA
Sbjct: 349 CLSHDLGVNSLSLVPSTLEVPYHCFVLGSVCRVSSPPVPLWRVA 392
>04_04_0868 + 28874332-28875747
Length = 471
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -3
Query: 356 ATEPRLRILLLITDRSSSNRASGYFIGLPSPRSRERGVTDDPVLARR 216
A PRL +LLL+ + F G PSP S + V PV ARR
Sbjct: 11 ARRPRLVVLLLVAFFALQLLVFLAFRGAPSPSSPDAAVDRVPVSARR 57
>03_04_0084 - 17153428-17153502,17154158-17154433
Length = 116
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 LGYLDGGN-APKSRARHTPS*YRIVCHPPFPGTWAGQPDEVPGRPVAAAS 314
LGYL GGN APK A+ P+ P P P E P A A+
Sbjct: 14 LGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAAAVAAPAEKPSPAKADAT 63
>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 231 CIS*ACVSLATWGHFHHLDSPGLTSCLFV--VRVAPPH--QHGEWPRPVNV 91
C S +C+ ++ GHF H T LF+ V APP HG+ + V V
Sbjct: 155 CYSLSCLCVSDLGHFQHAREEDKTRILFLSFVDDAPPRPFHHGDVYQQVEV 205
>12_01_0338 -
2594680-2594796,2595079-2595147,2595233-2595338,
2596099-2596154,2596356-2596415,2596544-2596622,
2596870-2596964,2597085-2597198,2597642-2597693,
2598870-2599015
Length = 297
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 213 VSLATWGHFHHLDSPGLTSCLFVVRVAPPH-QHGEWPRPVNVCDSDADIGSCSSIHTA 43
++LA HHL +P S + RV+P + ++PR V + + A C SI++A
Sbjct: 1 MALAAAAAAHHLVAPAAVSPYYSARVSPGFLRLHDFPRSVGLAATAAPRIFCQSINSA 58
>09_04_0350 + 16899076-16900164
Length = 362
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 78 RHYRIR*PAGATRHVGVG 131
RH+RIR PA ATR V G
Sbjct: 30 RHHRIRRPASATRRVAAG 47
>04_04_0069 + 22506885-22508354
Length = 489
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 78 RHYRIR*PAGATRHVGVG 131
RH+RIR PA ATR V G
Sbjct: 41 RHHRIRRPASATRRVAAG 58
>02_05_0011 + 24953472-24954506
Length = 344
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 190 FPPS-R*PRTNVLSVCRACRPPTPTWRVAPAG*R 92
FPPS R RTN L CRA R W V+ G R
Sbjct: 305 FPPSFRSKRTNHLIACRAVRNAGHPWIVSGGGAR 338
>01_06_1365 - 36690267-36692222
Length = 651
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = -2
Query: 276 AAQPTFQGKGGDRRSCIS*ACVSLATWGHFHHLDSPGLTSCLFVVRVAPPHQHGEWPRP 100
AA T + RRSC +L W FH D + S +APPHQ P P
Sbjct: 111 AAAGTARADEPQRRSCDVRGHSTL--WSLFHQDDRGRVPSSSSAADIAPPHQQPPPPPP 167
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 20 IYISSRDAAVCIELHDPMSASLSHTLT 100
+Y+ +RDAA + + P+ A S+TLT
Sbjct: 156 VYVLNRDAAARLTISSPLEAHKSNTLT 182
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 351 RAPASHPTSHYRQKQQQQGVRVLHRAAQPTFQGKGG 244
RA +H Q+QQ G + HR QP +G GG
Sbjct: 69 RAQQAHEQLQIYQQQQGFGSFLQHRIRQPASRGPGG 104
>11_04_0438 -
17737040-17737122,17737373-17737496,17737897-17738182,
17738265-17738397,17738742-17738953,17739455-17739816,
17739907-17739937,17744738-17745111
Length = 534
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 345 PASHPTSHYRQKQQQQGVRVLHRAAQP 265
PAS P +H+R + + +GVR+ R +P
Sbjct: 54 PASTPDTHHRSRIRVRGVRIGGRMCRP 80
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 27.5 bits (58), Expect = 3.8
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 GATRHVGVGGRHARQTDRTLVLGYLDGGNAPKSRARHTPS*YRIVCHPPFPGTWAGQPDE 284
GAT G A T GY P R R P Y + PP+P +P
Sbjct: 9 GATSDDDDDGAEATPTPGWAATGYASAAGPPPKRPRWEPPPY-LPPPPPYPIPQPARPRA 67
Query: 285 VPGRPVAAAS---VGN 323
P P + AS VGN
Sbjct: 68 AP-PPASTASGSLVGN 82
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 375 KCSRSPSNRAPASHPTSHYRQKQQQQGVRVLHRA 274
K S P P HP S Q QQQ +V ++A
Sbjct: 702 KSSSHPPRHRPPLHPQSFRNQAQQQSQAQVQYQA 735
>05_01_0313 -
2461487-2461861,2461929-2462513,2462819-2464154,
2464231-2464338,2464421-2464743
Length = 908
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 189 FHHLDSPGLTSCLFVVRVAPPHQHGE 112
FHH SP L FV R PP +HGE
Sbjct: 429 FHH-SSPRLQ---FVTRAPPPQEHGE 450
>03_01_0538 -
4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 150 FVVRVAPPHQHGEWPRPVN--VCDSDADIGSCSSIHTAASRLDIYIYSFK 7
F+ + HQHG W + + D +G+ S+ AA DI F+
Sbjct: 335 FIAHLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 384
>09_04_0094 -
14552970-14553182,14553275-14553679,14553780-14553902,
14554156-14554367,14554486-14554514,14554661-14555166
Length = 495
Score = 26.6 bits (56), Expect = 6.6
Identities = 20/62 (32%), Positives = 23/62 (37%)
Frame = -2
Query: 192 HFHHLDSPGLTSCLFVVRVAPPHQHGEWPRPVNVCDSDADIGSCSSIHTAASRLDIYIYS 13
H HHL P L S V PP P P S A G+ SS A D +
Sbjct: 6 HHHHLLPPRLLS----VHPQPPRLRLRRPLPRRAAASGAAAGTSSSTAAAPPPTDAALQE 61
Query: 12 FK 7
F+
Sbjct: 62 FR 63
>07_03_0249 -
15816515-15816868,15817749-15817958,15818051-15818245,
15818318-15818393,15819982-15820021,15820155-15820283,
15820363-15820405
Length = 348
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -3
Query: 317 DRSSSNRASGYFIGLPSPRSRERGVTDDPVLARRVSRSR 201
DR S R+S Y G S R R R +DD R RSR
Sbjct: 299 DRGSEYRSSSYRNGRDSERDRHRYRSDDMRKDRSRVRSR 337
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 150 FVVRVAPPHQHGEWPRPVNVCDSDADIG-SCSSIHTAASRLDIY 22
FV +A + G+W V + +G SCSS+H + +D+Y
Sbjct: 1000 FVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMY 1043
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 99 PAGATRHVGVGGRHARQTDRTLVLGYLDGGNAP 197
PA VGV GRH + +L Y +G AP
Sbjct: 364 PASYWISVGVRGRHPKTVPALAILSYGNGNAAP 396
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 14 LYIYISSRDAAVCIELHDPMSASLSHTLTGRGHSPCW 124
+Y S VC+ LHDP + T G G + W
Sbjct: 219 VYRACSCSSGPVCVLLHDPSQSEAGWTSHGGGRTGNW 255
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 246 PPFPGTWAGQPDEVPGRPVAAASVGNEK*DAKPG 347
PP P AG P+ G +AAA+ G E KPG
Sbjct: 235 PPPPHGGAGLPEVGGGAAIAAAATGEEA-VGKPG 267
>07_01_0516 - 3850252-3852870
Length = 872
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 50 CIELHDPMSASLSHTLTGRGHSPCWCGGAT 139
C +P S H L +G+SPC GG +
Sbjct: 156 CARRGNPRLGSQVHALAVKGNSPCGGGGGS 185
>03_02_0331 - 7527010-7529352
Length = 780
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 162 LVLGYLDGGNAPKSRARHTPS*YRIVCHPPFPGTWAGQPDEVPGRPVAAAS 314
+V+G LD G P+ R+ + PP P W G D PG P ++ +
Sbjct: 139 VVVGVLDTGVWPERRSLSDRN------LPPVPSRWRGGCDAGPGFPASSCN 183
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 320 TDRSSSNRASGYFIGLPSPRSRERGVTDDPVLARRVSRS 204
T+ +SSN+AS GLP P +G + +LAR RS
Sbjct: 237 TNDTSSNQASNTD-GLPKPNMTSKGSSSVVMLARPAIRS 274
>02_02_0338 + 9105725-9106581,9106950-9107091
Length = 332
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 360 PSNRAPASHPTSH-YRQKQQQQGVRVLHRAAQPTFQGKG--GDRRSCIS*ACVSLA 202
P+ P P +H YRQ+QQQQ + + G G G R C++ V LA
Sbjct: 44 PTQARPLKPPPAHQYRQQQQQQPANRKRQYGRHRGGGGGCSGRRVCCLATGFVLLA 99
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 228 YRIVCHPPFPGTWAGQPDEVPG 293
YR+V H P G WA P +PG
Sbjct: 31 YRLVLHDPVAGGWAALP-PLPG 51
>01_01_0425 +
3221303-3222602,3222710-3222928,3223010-3223114,
3223274-3223403,3223524-3224464,3224971-3225257
Length = 993
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 378 LKCSRSPSNRAPASHPTSHYRQKQQQQG 295
++ +RSPS+ ++ P + RQKQ++ G
Sbjct: 887 IEAARSPSSSRDSASPRTRTRQKQRRTG 914
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,411
Number of Sequences: 37544
Number of extensions: 330499
Number of successful extensions: 1089
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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