Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0240
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 31 0.24
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 29 1.3
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_37744| Best HMM Match : BON (HMM E-Value=9.7) 29 1.7
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 1.7
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2) 28 2.2
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 28 2.2
SB_54586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 27 3.9
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 27 3.9
SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 27 5.2
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 27 5.2
SB_5266| Best HMM Match : VWA (HMM E-Value=0) 27 6.8
SB_4932| Best HMM Match : ITAM (HMM E-Value=1.8) 27 6.8
SB_52902| Best HMM Match : ITAM (HMM E-Value=1.8) 27 6.8
SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_15776| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 31.5 bits (68), Expect = 0.24
Identities = 21/52 (40%), Positives = 23/52 (44%)
Frame = -1
Query: 382 KLEMFAQP*QQSPGFASYFSLPTEAAATGRPGTSSGCPAHVPGKGG*QTILY 227
K EMFAQ QQS GF F P + G G+ G G G Q LY
Sbjct: 571 KYEMFAQTLQQSRGFGGNFRFPNQ----GTGGSQGGAGGAGGGSGDNQGDLY 618
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -2
Query: 375 KCSRSPSNRAPASHPTSHYRQKQQQQGVRVLHRAAQPTFQGKGGDRRS 232
KC SPS R+ SH++ G + + P FQ D RS
Sbjct: 394 KCPPSPSTRSYQGPSESHFQFSPSMHGSKSGYERPGPAFQYSDSDTRS 441
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 11 KLYIYISSRDAAVCIELHDPMSASLSHTLTGRGHSPCWCGGATRTTNRQDVSPGLSR 181
KL +YIS+ A + L DP + +S+T+T G W + Q V PG R
Sbjct: 827 KLTVYISATLYADRVSLRDPSNKQVSYTMTMNG-GLLWFIEKPKVGKWQIVVPGFVR 882
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 125 CGGATRTTNRQDVSPGLSRWWK-CPQVASETHA*LIQDRLSPPFPWNVGWA 274
CGG TRT R +P S K C +A +T ++ P P N GW+
Sbjct: 397 CGGGTRTRTRTCTNPKPSSGGKDCVGIAKQT-----RECGKAPCPVNGGWS 442
>SB_37744| Best HMM Match : BON (HMM E-Value=9.7)
Length = 116
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 11 KLYIYISSRDAAVCIELHDPMSASLSHTLTGRGHSPCWCGGATRTTNRQDVSPGLSR 181
KL +YIS+ A + L DP + +S+T+T G W + Q V PG R
Sbjct: 56 KLTVYISATLYADRVSLRDPSNKQVSYTMTMNG-GLLWFIEKPKVGKWQIVVPGFVR 111
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 11 KLYIYISSRDAAVCIELHDPMSASLSHTLTGRGHSPCWCGGATRTTNRQDVSPGLSR 181
KL +YIS+ A + L DP + +S+T+T G W + Q V PG R
Sbjct: 518 KLTVYISATLYADRVSLRDPSNKQVSYTMTMNG-GLLWFIEKPKVGKWQIVVPGFVR 573
>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 363 SPSNRAPASHPTSHYRQKQQQQ 298
SPS A + PT+H +Q+QQQQ
Sbjct: 375 SPSRPAKPAMPTTHKQQQQQQQ 396
>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
Length = 864
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 20 IYISSRDAAVCIELHDPMSASLSHTL 97
+YI +RD+A + + P+ A SHTL
Sbjct: 141 VYIMNRDSAARLTISSPLEAHKSHTL 166
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 363 SPSNRAPASHPTSHYRQKQQQQ 298
SPS A + PT+H +Q+QQQQ
Sbjct: 391 SPSRPAKPAMPTTHKQQQQQQQ 412
>SB_54586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 131 GATRTTNRQDVSPGLSRWWKCPQVASETH 217
G+ TTNR P LSR ++A+ETH
Sbjct: 60 GSVCTTNRNTFFPKLSRATSTKEMAAETH 88
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 352 QSPGFASYFSLPTEAAATGRPGTSSGCPAHVPG 254
Q+PG+ + A G P + GCPA VPG
Sbjct: 878 QAPGYPAQVP-GYPAQVPGYPAQAPGCPAQVPG 909
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 11 KLYIYISSRDAAVCIELHDPMSASLSHTLTGRG 109
KL +YIS+ A + L DP + +S+T+T G
Sbjct: 474 KLTVYISATLYADRVSLRDPSNKQVSYTMTMNG 506
>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 162 TSCLFVVRVAPPHQHGEWPRPVNVCDSDADIGSCSSIHTAASRLDIYI 19
TSCLF+ V P +H W R ++ ++ + IG + YI
Sbjct: 65 TSCLFLRDVLVPKKHYIWRREPDLWNTMSVIGQLREFDRQKESFEAYI 112
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 363 SPSNRAPASHPTSHYRQKQQQQ 298
SPS A + PT+H Q+QQQQ
Sbjct: 1012 SPSRPAKPAMPTTHKPQQQQQQ 1033
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 125 CGGATRTTNRQDVSPGLSRWWK-CPQVASETHA*LIQDRLSPPFPWNVGWA 274
CGG TRT R +P S K C +A +T ++ P P N GW+
Sbjct: 312 CGGGTRTRTRTCTNPKPSSGGKDCVGIAKQT-----RECGKAPCPVNGGWS 357
>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
Length = 797
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 135 APPHQHGEWPRPVNVCDSDADIGSCSSIHTAASRLD 28
+PP P P +C SD D+G + + + R D
Sbjct: 651 SPPPPPSLPPSPSGICQSDVDLGFLTDVSNSIVRND 686
>SB_4932| Best HMM Match : ITAM (HMM E-Value=1.8)
Length = 164
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 373 MFAQP*QQSPGFASYFSLPTE 311
M+A+P +Q PG+ S +S P +
Sbjct: 89 MYAEPNEQDPGYTSLYSRPLD 109
>SB_52902| Best HMM Match : ITAM (HMM E-Value=1.8)
Length = 159
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 373 MFAQP*QQSPGFASYFSLPTE 311
M+A+P +Q PG+ S +S P +
Sbjct: 84 MYAEPNEQDPGYTSLYSRPLD 104
>SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 26.6 bits (56), Expect = 6.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 166 TNVLSVCRACRPPTP 122
TN ++ C++C PPTP
Sbjct: 292 TNQIAACKSCVPPTP 306
>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 324 HYRQKQQQQGVRVLHRAAQPTFQGKGGDRRSCIS*ACV 211
H +QK G + R + P K GDR CIS CV
Sbjct: 434 HCKQKLDN-GATCVSRVSPPVDGTKCGDRHWCISGECV 470
>SB_15776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 196 GAFPPSR*PRTNVLSVCRACRPPTPTWR 113
G PP + L VCR PP +WR
Sbjct: 19 GTGPPLEVDGIDKLDVCRQAHPPFASWR 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,649
Number of Sequences: 59808
Number of extensions: 333036
Number of successful extensions: 1061
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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