Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0240
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...    32   0.15 
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    28   1.8  
At3g47640.1 68416.m05186 basic helix-loop-helix (bHLH) family pr...    27   3.2  
At5g16740.1 68418.m01960 amino acid transporter family protein l...    27   4.2  
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim...    27   4.2  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    27   4.2  
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    27   5.6  
At1g69270.1 68414.m07941 leucine-rich repeat family protein / pr...    27   5.6  
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...    26   7.4  
At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative...    26   9.7  

>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 20/43 (46%), Positives = 21/43 (48%)
 Frame = -1

Query: 382 KLEMFAQP*QQSPGFASYFSLPTEAAATGRPGTSSGCPAHVPG 254
           K + FAQ  QQS GF S F  P   A TG  G   G  A V G
Sbjct: 757 KYQAFAQTLQQSRGFGSEFRFPD--APTGTTGAFPGAAATVGG 797


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 105 GATRH---VGVGGRHARQTDRTLVLGYLDGGNAPK 200
           G  RH   V + G HA +T+  LV  YL GGN  K
Sbjct: 757 GRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEK 791


>At3g47640.1 68416.m05186 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 240

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 369 SRSPSNRAPASHPTSHYRQKQQQQGVRVLHRAAQPTFQGKG 247
           S+   N +PA  P  H+   QQQ   RV      P FQG G
Sbjct: 130 SKPDLNTSPA--PEYHHHHYQQQHPERVSQFPGLPIFQGPG 168


>At5g16740.1 68418.m01960 amino acid transporter family protein low
           similarity to lysosomal amino acid transporter 1 [Rattus
           norvegicus] GI:14571904; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 426

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 14  LYIYISSRDAAVC--IELHDPMSASLSHTLTGRGHSP 118
           L+IY+    A V   I LHD +SA+   T +  GH P
Sbjct: 114 LFIYLEIFMALVSYTISLHDNISAAFPATFSNHGHFP 150


>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
           similar to DEIH-box RNA/DNA helicase [Arabidopsis
           thaliana] GI:5881579; contains Pfam profiles PF04408:
           Helicase associated domain (HA2), PF00271: Helicase
           conserved C-terminal domain
          Length = 1299

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 371 VRAALATEPRLRILLLITDRSSSNRASGYFIGLPSPR 261
           +R  L + P LR L+L++    + R SGYF G P  R
Sbjct: 329 IRDLLPSNPHLR-LILMSATLDAERFSGYFGGCPVVR 364


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
           serine/threonine phosphoesterase family protein contains
           Pfam profiles: PF00149 calcineurin-like phosphoesterase,
           PF01344 kelch motif
          Length = 1018

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +3

Query: 177 LDGGNAPKSRARHTPS*YRIVCHPPFPGTWAGQPDEVP----GRPVAAASVGNEK 329
           LDGG +P    R TP        PP  G+    P   P     +  AAA VG E+
Sbjct: 20  LDGGQSPSPMERETPQQMNDQSPPPEGGSVPTPPPSDPNPATSQQQAAAVVGQEQ 74


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger (C3HC4 type RING
            finger) family protein low similarity to SP|P36607 DNA
            repair protein rad8 {Schizosaccharomyces pombe}; contains
            Pfam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain, PF00628:
            PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
            finger)
          Length = 1648

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 107  GHSPCWCGGATRTTNRQDVSPGLSRWWKCP 196
            GHS C C      T R+ V   L +W  CP
Sbjct: 1345 GHSTC-CNCFFAMTERKSVQETLQKWVMCP 1373


>At1g69270.1 68414.m07941 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 540

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 GRHARQTDRTLVLGYLDGGN 191
           G HA +T+  L+  YL GGN
Sbjct: 322 GYHASETEMFLIYNYLSGGN 341


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 382 KLEMFAQP*QQSPGFASYFSLPTEAAATGRPGTSSGCP 269
           K + FAQ  QQS GF S F   + A      G ++  P
Sbjct: 758 KYQAFAQTLQQSRGFGSEFRFDSTAGVGRTTGVAAADP 795


>At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative
           similar to probable NADP-dependent oxidoreductase
           (zeta-crystallin homolog)  P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816
          Length = 350

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 231 RIVCHPPFPGTWAGQPDEVPGRPVAAASV 317
           RI    P PGT A  P  +PG P+   SV
Sbjct: 61  RIRMGKPDPGTAALAPHYIPGEPIYGFSV 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,190,027
Number of Sequences: 28952
Number of extensions: 213825
Number of successful extensions: 555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)