Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0239
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   4.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   6.4  

>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 655 LTICHSPFRLRNCWKGRSVRGLFAITPAGERGMC 554
           + +CH  FRL    +G S++ L  ++P G  G C
Sbjct: 451 ICLCHIIFRLAFKKQGHSLKELGFVSPMGIWGSC 484


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 11  PPNSAAADPFFIA*VCRRAHSPPGVKRLLEPIDIYNVNAPHTLR 142
           P  S + DP +       A  PP +K    P+DI N++A   L+
Sbjct: 212 PSTSNSPDPLY------SASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 346 VNRFGSKYEAIL*KQNCFPIPIF 278
           V  FGS Y A+L     FP PIF
Sbjct: 294 VRMFGSAYRAVLHFAEIFPQPIF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,859
Number of Sequences: 5004
Number of extensions: 61401
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)