Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0239
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    29   2.6  
Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 321 KQYFENRTASLSLYLLGVGPLVIPTGRYHRPAY 223
           ++Y ++ + +L L    + PL+IPT  Y  P+Y
Sbjct: 328 ERYTQHMSPNLPLQTATIAPLIIPTENYDSPSY 360


>Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical
           protein K01D12.5 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = -2

Query: 681 RDFYQNINGLQFAIRHSGCATVGKGDRCGASSLLRQLAKGGCAARRLSWVTPGFSQSR-- 508
           R++YQ    L     +S   TVG+  +   S+    +  GG +       + G++Q    
Sbjct: 78  RNYYQYPQYLPTHTGYSNIQTVGQPYQMYGSAPGSNVVSGGNSE------SYGYNQQAPV 131

Query: 507 -VVKRRPVNCNTTHYRANWVPGPPSSFSETNERQ 409
             V   PV+ +      +  P PPS FSET ER+
Sbjct: 132 PTVAPAPVHFSERQRSYSAAPTPPSPFSETRERE 165


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 264 PLVIPTGRYHRPAYFCR 214
           P+VI TGRY  P Y CR
Sbjct: 299 PVVIHTGRYSGPTYNCR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,858
Number of Sequences: 27780
Number of extensions: 358689
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)