Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0239
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30380.1 68416.m03835 expressed protein ; expression supporte...    29   4.2  
At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone] fl...    28   5.6  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    27   9.7  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    27   9.7  
At1g27020.1 68414.m03294 expressed protein                             27   9.7  

>At3g30380.1 68416.m03835 expressed protein ; expression supported
           by MPSS
          Length = 399

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 450 PGPPSSFSETNERQFIFIYIGIENXXXXX*IAKIQ*TGSDRNMKQYFENRTASLSL 283
           P PPS   E  E +   I  G+EN      + K++    ++ +  Y +N TASL+L
Sbjct: 17  PNPPSYGVEVVEGKLRLI--GVENVKENVEVLKLKTKRGNQVVAAYIKNPTASLTL 70


>At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone]
           flavoprotein subunit, mitochondrial / flavoprotein
           subunit of complex II identical to SP|O82663 Succinate
           dehydrogenase [ubiquinone] flavoprotein subunit,
           mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of
           complex II) {Arabidopsis thaliana}
          Length = 634

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 663 INGLQFAIRHSGCATVGKGDRCGASSLLRQLAKGGCAARRLSWVT-PGFSQSRVVK 499
           I GL  A   + CA+V   +R GA+SLL  +  G   A R++ ++ PG  Q  + K
Sbjct: 422 IPGLM-AAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISKPGEKQKPLEK 476


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 278 KYRDREAVLFSKYCFIFRSEPVHWIFAIHYLLLLFSIPIYIKMNCR 415
           +Y  RE +  S     F S+P++ +FA H +  L   P+  +  C+
Sbjct: 181 RYIRREELRLSSLASFFLSQPINQVFADHGVRFLVRSPLSSRGVCK 226


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 601 VRGLFAITPAGERGMCCKAIKLGNARVFPVTRCKTTASEL*YDSL*GELGTGPPL 437
           +RGL +    G+   CC+A  + +  V    RCK  A ++  +S    +GT  PL
Sbjct: 440 LRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPL 494


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 515 WENPGVTQLNRLAAHPPFASW 577
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,175
Number of Sequences: 28952
Number of extensions: 341447
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)