Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0237
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 0.85
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 29 0.85
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.0
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 27 2.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 27 2.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 6.0
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 6.0
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.9
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 25 7.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.9
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 7.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.9
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 336 DPVPVSPGAVESAGEGSCNSNDGYNQRTDDKSPPGS 443
D V V V G S ND Y TDD+ PP +
Sbjct: 12 DNVSVHSREVSVNGSDSGTGNDAYKLETDDEHPPAT 47
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.7 bits (61), Expect = 0.85
Identities = 22/67 (32%), Positives = 26/67 (38%)
Frame = +1
Query: 28 SPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDV 207
+P T S + N Q S S E L+R F +QQ QLNQ
Sbjct: 683 TPAADSTKSGTIQPTNRNGEGLSYSPHQQFSPSAPQAEKLSRSMSPFVSQQQQLNQPVSN 742
Query: 208 KRLGLTQ 228
K GLTQ
Sbjct: 743 KPDGLTQ 749
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 16 FADRSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLN 150
F PDR +N P ++ T NS S N T S L NL + N
Sbjct: 301 FFSSMPDRPSSNEPMTSNLTSNSGSMTNST--STDLPTSNLPSQN 343
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 31 PDRSDTNSPRSAVSTPNSNSSINV 102
PDRSDTNSP + ++INV
Sbjct: 52 PDRSDTNSPTDHALHDENETNINV 75
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 223 TQVPGASQGPSTV*TRSSASALRGRPDS-VSSSRGERSATPSPSPREPSK 369
T V + PSTV + +S+ + +P + V+++ + SA P P P P++
Sbjct: 1055 TTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPAE 1104
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 271 SSASALRGRPDSVSSSRGERSATPSPSPREPSKALARVRVTVMMATTR 414
SSASAL R ++ S R++T S S +K + T + +T++
Sbjct: 14 SSASALPNRTNTARRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTSK 61
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 28 SPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMF-FHAQQMQLNQSFD 204
SP ++P+S +S N NS + D +++ + +LN++ F A Q
Sbjct: 251 SPAGHQQSTPKSTLSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFHLDASPRQARPRRS 310
Query: 205 VKRLGLTQVPGASQGPST 258
V P S+ PS+
Sbjct: 311 VSLATGLNSPSVSKPPSS 328
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +1
Query: 13 FFADRSPDRSDTNSPR--SAVSTPNSNSSINVTDQSIS-LSQQNLETLNRMGMFF--HAQ 177
F DR +SD+ SPR + P S++ + D+S++ L+ ++ E + + FF
Sbjct: 63 FEIDRDSLKSDSGSPRLHQNATAPTSSTPLQSPDESVNKLNSEDEEGNSSVAPFFLDTTN 122
Query: 178 QMQLNQSFDVKRLGLTQVPGASQG 249
+LN + L+ V A+QG
Sbjct: 123 FDRLNDNITTDDEQLSPVLTANQG 146
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 28 SPDRSDTNSPRSAVSTPNSNSSINVTDQSIS 120
S + ++PRS+V +P+SN+S + T S++
Sbjct: 1243 SSEAPSVSTPRSSVPSPHSNASPSPTSSSMA 1273
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 351 SPGAVESAGEGSCNSNDGYNQRTDDKSPPGSDD-DTPQQSTDNKKK 485
S + S E S ND + +D +S S+D D+ S+D++ +
Sbjct: 165 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESE 210
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 351 SPGAVESAGEGSCNSNDGYNQRTDDKSPPGSDD-DTPQQSTDNKKK 485
S + S E S ND + +D +S S+D D+ S+D++ +
Sbjct: 219 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESE 264
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +1
Query: 49 NSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVKRLGLTQ 228
+S S S+P+ + ++ ++SIS S +E R A+ LN + DV L +
Sbjct: 107 SSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKS----ARGNGLNGAIDVANLPFEE 162
Query: 229 VPGASQGPSTV*TRSSASALR 291
+P S + R+ L+
Sbjct: 163 LPNFCPDMSVLDNRTHPRTLK 183
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 193 QSFDVKRLGLTQVPGASQGPSTV*TRSSASALR 291
QSFD K + +P S PS++ RSS S+ R
Sbjct: 962 QSFDKKSSLIDSIPALSPAPSSL-ARSSVSSQR 993
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 28 SPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQ 129
SPDR T S AVS P + S VT ++ + Q
Sbjct: 405 SPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQ 438
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 19 ADRSPDRS--DTNSPRSAVSTPNSNSSINVTDQSISLSQQNLE 141
A RS + S D+N+ + V+ + S IN++ S + QQ +E
Sbjct: 735 AGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVE 777
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 4 DERFFADRSPDRSDTNSPRSAVSTPNSNSSINVTDQ 111
+E+ + S + S TN+PR TP+S S + + Q
Sbjct: 374 EEKLKSRFSANASKTNTPRPLERTPSSVSPVKASSQ 409
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = +1
Query: 28 SPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETL 147
SP +S TNSP +S+P S++S + + ++ SL ++ ++L
Sbjct: 325 SPLQSCTNSPSPPLSSPASSASPSESLRNESLGIKSAKSL 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,709
Number of Sequences: 5004
Number of extensions: 52412
Number of successful extensions: 218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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