Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0237
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0272 + 22604458-22604877 41 0.001
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 33 0.22
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 32 0.50
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 31 0.67
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958... 30 2.0
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 2.7
11_03_0090 - 9797967-9798814,9798931-9799312 29 2.7
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 29 2.7
06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188 29 2.7
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 29 2.7
01_01_0785 - 6076089-6077615 29 2.7
01_01_0780 - 6036454-6037992 29 3.5
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411... 28 6.2
01_01_0782 - 6056440-6057954 28 6.2
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184... 28 8.2
06_03_0632 - 22949942-22951351 28 8.2
>03_05_0272 + 22604458-22604877
Length = 139
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Frame = +3
Query: 60 LGRQHAQLQLLNKRD-RPVDIPVAAELGDSQPHGHVLSRATNAIESKF*REAARLDPSAR 236
+G H L +R RPV +P AAELG+ P GH +R E R P R
Sbjct: 17 VGADHGDLGHEPERAVRPVRVPAAAELGEVPPRGHPEARGEQLHEQAHGR-GLEEQPEQR 75
Query: 237 C*SGPKHSIDAILGLSSQRQARLSEF*QRREECDPVPVS--PGAVESAGEGSCNSNDGYN 410
+G + ++ +L ++ ++ + + RE+ P P G +AGEG+ G
Sbjct: 76 V-AGGRAGLEVVLEVARVQERDAHQEPRPREQPQPAPREGRHGHATAAGEGAVVVGVGVT 134
Query: 411 QRTDD 425
DD
Sbjct: 135 GGRDD 139
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 234 RC*SGPKHSID-AILGLSSQRQARLSEF*QRREECDPVPVSP--GAVESAGEGSCNSNDG 404
RC S + ++ A++GL +R+A + ++R DP P P GA + G+G S DG
Sbjct: 10 RCTSAGRMGVEEAVMGLGRRRRAEWQQ--RKRGAHDPAPPPPGSGAAQRLGKGEAASRDG 67
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -1
Query: 124 TGISTGRSRLLRSWSWAC*RPS 59
TG+S GRS +LRS +AC RP+
Sbjct: 877 TGVSVGRSSMLRSLGYACWRPA 898
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 31.5 bits (68), Expect = 0.67
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +1
Query: 52 SPRSAVSTPNSNSSINVTDQSISL-SQQNLETLNRMGMFFHAQQMQLNQSFDVKRLGLTQ 228
S R A + N+ +N ++Q+++ + + ET H Q+ N S + R+
Sbjct: 380 SDRCADAADNTEEEMNSSEQTVNCQTPEATETPTEEISSQHIQETINNPSTTLPRVA--- 436
Query: 229 VPGASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREP-SKALARV 384
+S+GP+T + S+ G D G+ ++PS S P K L R+
Sbjct: 437 ---SSEGPATSNAGDNGSSEEGGEDHHRQEEGDEPSSPSSSSSVPREKILERI 486
>08_02_0233 +
14593639-14594468,14594480-14594986,14595362-14595856,
14596592-14596662,14597116-14597199,14597328-14597446,
14598029-14598109,14598397-14598411
Length = 733
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 434 WRLVISSLVVAIITVTRTLASAFDGSR-GDGDGVALLSPLLE 312
WRL + SL A T+ A+ R GDG GV ++ PLLE
Sbjct: 153 WRLQLGSLPCAAATLRVLHANDVGVERLGDGGGVGVVLPLLE 194
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 37 RSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVKRL 216
++ TN PRSA + P S+ D S + ++ T+++ G H L+ D L
Sbjct: 125 QTTTNRPRSAETRPGSSQLSRFADNSSENMKVSIRTIDKSGSSSHGHGFTLSTG-DFPTL 183
Query: 217 G 219
G
Sbjct: 184 G 184
>11_03_0090 - 9797967-9798814,9798931-9799312
Length = 409
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 37 RSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQM 183
R+D + P S P S+S+I + + I L + L MG++ A ++
Sbjct: 214 RTDLHLPEGVTSLPQSSSAIELAEIGIQLVANDTSQLKDMGIYEGAPRL 262
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 372 AGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKK 482
AG NS D +R KSPP D+D +Q T K
Sbjct: 572 AGNEPANSQDE-EERVVQKSPPAQDEDVIEQETQTLK 607
>06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188
Length = 360
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 327 EECDPVP-VSPGAVESAGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKKKHRRN*T 503
+ DPVP V+ V+SAG GS +S + QR + P Q+ N R++
Sbjct: 116 DPADPVPPVADKHVKSAG-GSVDSATKHLQRNPTDLSGENSASLPSQNVINGNYSRQSSV 174
Query: 504 TLQPTSFMSWS 536
T+ T ++W+
Sbjct: 175 TMAKTGQVNWT 185
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 368 FDGSRGDGDGVALLSPLLELTESGLPLRAEA 276
F GS G G+G AL P E G+P+ EA
Sbjct: 112 FGGSAGGGEGGALALPSASGVEEGIPVEDEA 142
>01_01_0785 - 6076089-6077615
Length = 508
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 238 ASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPSKALARVRVTVMMATTRE 417
A+Q ST + SAL PD ++ R E ++ SP EP A + A RE
Sbjct: 308 AAQDASTSSLCWAVSALDSHPDVLAGVRAEVASLWSPESGEPITAEKIAEMKYTQAVARE 367
Query: 418 LMTSRHR 438
++ RHR
Sbjct: 368 VV--RHR 372
>01_01_0780 - 6036454-6037992
Length = 512
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 238 ASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPSKALARVRVTVMMATTRE 417
A+Q ST + SAL PD ++ R E +A SP EP A + A RE
Sbjct: 312 AAQDASTSSLCWAVSALDSHPDVLARVRAEVAALWSPESGEPITAEMMTEMKYTQAVARE 371
Query: 418 LM 423
++
Sbjct: 372 VV 373
>03_06_0720 +
35739383-35739391,35739802-35740275,35740695-35741122,
35741273-35741351
Length = 329
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 307 VSSSRGERSATPSPSPREPSK 369
V S+RG +ATPSP+P P +
Sbjct: 169 VGSTRGSPAATPSPAPLTPDR 189
>01_01_0782 - 6056440-6057954
Length = 504
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 238 ASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPSKALARVRVTVMMATTRE 417
A+Q ST + SAL PD ++ R E ++ SP EP A + A RE
Sbjct: 311 AAQDASTSSLCWAVSALDSHPDVLARVRAEVASLWSPDSGEPITADKIAEMKYTKAVARE 370
Query: 418 LMTSRHR 438
++ RHR
Sbjct: 371 VV--RHR 375
>09_06_0011 +
20217882-20217989,20218085-20218272,20218355-20218421,
20218464-20218538,20219100-20219152,20219661-20219715,
20219812-20219886,20220495-20220612,20220720-20220766,
20220853-20220954
Length = 295
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 271 SSASALRGRPDSVSSSRGERSATPSPSPREPSKALARV 384
++AS G + VSSS G S + S + RE +ALA V
Sbjct: 26 ATASDESGDDEEVSSSSGSESESDSDAERELERALADV 63
>06_03_0632 - 22949942-22951351
Length = 469
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 365 DGSRGDGDGVALLSPLLELTESGLPLRAEAED 270
+G GDGDG L P + TE+G R +A +
Sbjct: 54 EGEGGDGDGRLELLPFSDGTENGFVKRGDAAE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,166
Number of Sequences: 37544
Number of extensions: 411174
Number of successful extensions: 1973
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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