Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0237
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +3

Query: 369 SAGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKKKHRR 494
           S G G      G+N +  D       +D    + DN+   R+
Sbjct: 91  SRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRK 132


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 175 ARERTCPCG*ESPSSAATGISTGR 104
           A + TC C   +PS   TG+S+ R
Sbjct: 326 AFKETCRCSPSNPSITRTGLSSVR 349


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 40  SDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLE 141
           ++ N+ ++ V + +  S+IN++     + QQN+E
Sbjct: 222 TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVE 255


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
 Frame = +3

Query: 324 REECDPVPVSPGAVESAGEGSCNSNDGYNQRTDD-----KSPPG---SDDDTPQQSTDNK 479
           ++EC   P+     E AG  SC +   +++ +D      +  PG   ++ D  +      
Sbjct: 259 KQECTECPIGKFKHE-AGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQP 317

Query: 480 KKHRRN*TTL---QPTSFMSWSAP 542
               +N T     Q T F+SW+AP
Sbjct: 318 PSAPQNLTVNFVDQSTVFLSWNAP 341


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 160 CPCG*ESPSSAATGISTG 107
           C CG ++PS    G +TG
Sbjct: 151 CNCGWKNPSRIVGGTNTG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,270
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)