Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0237
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26230.1 68418.m03123 expressed protein predicted protein, Ar... 32 0.32
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 32 0.42
At5g64650.1 68418.m08125 ribosomal protein L17 family protein co... 31 0.73
At5g01280.1 68418.m00037 expressed protein 31 0.73
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 0.97
At2g40070.1 68415.m04923 expressed protein 31 0.97
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 31 0.97
At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-li... 30 1.3
At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-li... 30 1.3
At3g29710.1 68416.m03745 hypothetical protein contains Pfam prof... 30 1.3
At1g49270.1 68414.m05524 protein kinase family protein contains ... 30 1.7
At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I ... 29 2.2
At5g26320.1 68418.m03146 meprin and TRAF homology domain-contain... 29 3.0
At3g60410.2 68416.m06757 expressed protein 29 3.0
At3g60410.1 68416.m06756 expressed protein 29 3.0
At3g51130.1 68416.m05599 expressed protein contains Pfam PF03676... 29 3.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.0
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 29 3.0
At1g14740.1 68414.m01762 expressed protein 29 3.0
At5g37630.1 68418.m04532 chromosome condensation family protein ... 29 3.9
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 28 5.2
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 5.2
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 28 5.2
At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related si... 28 5.2
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 28 6.8
At4g15840.1 68417.m02409 expressed protein 28 6.8
At3g19830.1 68416.m02512 C2 domain-containing protein low simila... 28 6.8
At3g09000.1 68416.m01053 proline-rich family protein 28 6.8
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 27 9.0
At3g46540.1 68416.m05052 epsin N-terminal homology (ENTH) domain... 27 9.0
At3g08670.1 68416.m01007 expressed protein 27 9.0
At2g34830.1 68415.m04276 WRKY family transcription factor 27 9.0
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 9.0
At1g35660.1 68414.m04432 expressed protein 27 9.0
>At5g26230.1 68418.m03123 expressed protein predicted protein,
Arabidopsis thaliana
Length = 341
Score = 32.3 bits (70), Expect = 0.32
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 25 RSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFD 204
R P R NSP + S+P+S+SS + SIS + + +F+ Q + L S
Sbjct: 3 RQPPRP-RNSPPQSHSSPSSSSSEFEFNISISPRKASSSLCPADELFYKGQLLPLQLS-- 59
Query: 205 VKRLGLTQVPGASQGPSTV*TRSSAS-ALRGRPDSVSSSRGERSATPSPSPREP 363
RL L + G+S S + SS+S A DS S+ S P P
Sbjct: 60 -PRLSLVRTLGSSTSSSDYTSSSSSSVATSAARDSTESNSSTDSTASFPLLHPP 112
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 250 PSTV*TRSSASALRGR-PDSVSSSRGERSATPSPSPR--EPSKALARVR 387
P T TR + RGR P+ + S G RS TP P P EPS + R
Sbjct: 286 PQTPETRPRTAQRRGRSPEFMERSPGPRSKTPEPQPTYFEPSSRTPKQR 334
>At5g64650.1 68418.m08125 ribosomal protein L17 family protein
contains Pfam profile: PF01196 ribosomal protein L17
Length = 160
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 301 DSVSSSRGERSATPSPSPREPSKALARVRVTVMMATTRELMTS 429
D + R + ATP P PR P AR R+T A +E TS
Sbjct: 114 DRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTS 156
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 271 SSASALRGRPDSVSSSRG-ERSATPSPSPREPSKALARVRVTVMMATTRELMTS 429
SS S +R RP S SSSR R TP+ + P+K + TTR +TS
Sbjct: 77 SSVSGIR-RPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTS 129
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 25 RSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLN 150
+ P D SP+S STP + S TD I+ + Q ++TLN
Sbjct: 32 KPPCPDDDQSPKSDSSTPLTIDSTPETDDRINETAQKVQTLN 73
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 22 DRSPDRSDTNSPRSAVSTPNSNSSINVTDQSI 117
D+SP +SD+++P + STP ++ IN T Q +
Sbjct: 39 DQSP-KSDSSTPLTIDSTPETDDRINETAQKV 69
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 241 SQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPSKALARVRVT 393
S PST +R++ S+ RP S+++SR SAT P+P S +L+ R+T
Sbjct: 202 SSRPSTPTSRATVSSAT-RP-SLTNSRSTVSATTKPTPMSRSTSLSSSRLT 250
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -2
Query: 489 CVSSCCPWTAVACRRRYPVATCHQFSGCSHHYCYTN 382
C S C W V ++ + C Q+ S + C+ N
Sbjct: 302 CSCSSCDWANVISTSKFEIHACKQYRRASQYICFEN 337
>At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-like
cysteine protease family protein contains Pfam profiles
PF02338: OTU-like cysteine protease, PF02810: SEC-C
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 178 VARERTCPCG*ESPSSAATGISTGRS 101
+ R +TCPCG + + G +TGRS
Sbjct: 310 IPRNKTCPCGSKKKYKSCCGTATGRS 335
>At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-like
cysteine protease family protein contains Pfam profiles
PF02338: OTU-like cysteine protease, PF02810: SEC-C
motif
Length = 375
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 178 VARERTCPCG*ESPSSAATGISTGRS 101
+ R +TCPCG + + G +TGRS
Sbjct: 311 IPRNKTCPCGSKKKYKSCCGTATGRS 336
>At3g29710.1 68416.m03745 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 669
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 366 ESAGEGSCNSNDGYN--QRTDDKSPPGSDDDTPQQSTDNKKKHRRN*TTLQPTSFMSWSA 539
ES GEG+ ++G + ++DK +++ +P Q+T TT PT+ +A
Sbjct: 41 ESEGEGAGEESEGSGAVEESEDKEKVPAEEQSPTQTTATAMATNAAPTTAAPTTTAPTTA 100
Query: 540 PS 545
P+
Sbjct: 101 PT 102
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 318 QRREECDPVPVSPGAVESAGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKKKHRRN 497
Q+++E P P+ + S G S + + + +SPP PQQS +N K N
Sbjct: 57 QQQQESPPPPLPENS--SDGSSSSSPPPPSDSSSQSQSPPPPSTSPPQQSDNNGNKGNNN 114
>At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I
(IP5PI) nearly identical to inositol polyphosphate
5-phosphatase I [Arabidopsis thaliana] GI:10444261
Length = 586
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 369 SAGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKKKHRR 494
S + S +S+D Y R+ + P S P+ TD++ K RR
Sbjct: 44 SESDYSADSDDDYEDRSQEFDPISSGVTNPRVDTDDRPKLRR 85
>At5g26320.1 68418.m03146 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 352
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 181 MQLNQSFDVK-RLGLTQVPGASQGPSTV*TRSSASALRGRPDSVSSSRGE 327
++ N S+ +K LGLT+V + S + T +S S ++GR ++ SS E
Sbjct: 36 IEYNNSYSLKTNLGLTRVLREERPSSKIVTITSFSVIKGRSEAFESSTFE 85
>At3g60410.2 68416.m06757 expressed protein
Length = 324
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 289 RGRPDSVSSSRGERSATPSPSPREPSKALARVR 387
+G VS S +RSAT S +P SK R+R
Sbjct: 113 KGNASGVSDSAADRSATKSTTPDGRSKIFIRIR 145
>At3g60410.1 68416.m06756 expressed protein
Length = 324
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 289 RGRPDSVSSSRGERSATPSPSPREPSKALARVR 387
+G VS S +RSAT S +P SK R+R
Sbjct: 113 KGNASGVSDSAADRSATKSTTPDGRSKIFIRIR 145
>At3g51130.1 68416.m05599 expressed protein contains Pfam PF03676:
Uncharacterised protein family (UPF0183)
Length = 410
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 172 AQQMQLNQSFDVKRLGLTQVPGASQGPSTV*TRSSASALRG 294
+Q+++L + FDVKRL + GPST+ T + AL G
Sbjct: 95 SQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFG 135
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 202 DVKRLGLTQVPGASQGPSTV*TRSSASALRGRPDSVSSSRGERSATP----SPSP 354
D +R+ L+Q G PS + S S +RGR S SSR +++ +P SP+P
Sbjct: 535 DEERVSLSQ-GGRHTSPSHIKQDGSMSPVRGRGKSSPSSRHQKARSPVRRRSPTP 588
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 29.1 bits (62), Expect = 3.0
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +1
Query: 13 FFADRSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLN-RMGMFFHAQQMQL 189
F A +P S + P A S P S++ + T S S + N G + ++ L
Sbjct: 356 FTASSAPVSSSSQDPVPA-SIPISSAPVPQTFSVTSTSTVSATGFNVPFGKPLTSVKVDL 414
Query: 190 NQSFDVKRLGLTQVPGASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSP 354
NQ+ P S GP+ T + + P+ VSSS G+ S P +P
Sbjct: 415 NQA-------APSTPSPSPGPTAGFTFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 242 LAPGTWVKPSRFTSKL*FNCICCA*KNMPMRLRVSKF-CCDRDIDWSV-TFIEELE 81
+ PG +K R T+++ F+CI CA K+ F CC + +W + T I+EL+
Sbjct: 475 IKPGHSLKGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCAK--NWGLETLIKELD 528
>At5g37630.1 68418.m04532 chromosome condensation family protein
contains pfam profile: PF04154 chromosome condensation
protein 3, C-terminal region
Length = 1051
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +1
Query: 178 QMQLNQSFDVK----RLGLTQVPGASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPS 345
Q Q N F++ L +T+ Q P+ T+ + S R R + SS E S
Sbjct: 940 QDQANSIFEILGVSYNLEITETTTVPQTPAPCSTKPARSRRRARIEETSSDEEE---VAS 996
Query: 346 PSPREPSKALARVRVTVMMATTRELMTSRHRVA 444
P P P+ + R A ++M S+ +++
Sbjct: 997 PPPSAPNTLMTRSHRASKAAALAKIMASKVKMS 1029
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 241 SQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPSKA-LARVRVTVMMATTRE 417
+ PST S S R P+S SS ER + P+P E S+A +A V+ T TT
Sbjct: 42 NNSPSTTTPHSRLSLDRSSPNSKSSV--ERRSPKLPTPPEKSQARVAAVKGTESPQTTTR 99
Query: 418 L 420
L
Sbjct: 100 L 100
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Frame = +1
Query: 31 PDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVK 210
P+RS NS ++ +N+++ + + + G+ + Q++ LN +FD
Sbjct: 223 PNRSSANSYFNSFPPGYNNNNLGSAGRFSPIGSGR-NAFSSFGLGLN-QELNLNSNFDGN 280
Query: 211 RLGLTQVPGASQGPSTV*TRSSASALRGRPDSV--SSSR---GERSATPSP 348
LG +++PG S R ++ R DS S+R G RS + P
Sbjct: 281 TLGYSRIPGNQYFNSASPNRYNSPIGYNRGDSAYNPSNRDLWGNRSDSSGP 331
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +1
Query: 82 SNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVKRLGLTQVPGASQGPSTV 261
+N++ NV + ++ ++NL R H + ++ DV + VP S S+V
Sbjct: 39 NNNNNNVRNIHVAAFEKNLNVFVRD----HLENCSVSVD-DVVDDSIKAVPECSSNKSSV 93
Query: 262 *TRSSASALRGRPD--SVSSSRGERSATPSPSPREPSKALARVRVTVMMATTRE 417
+ R D S SSS G S S P PS+ A V + A T +
Sbjct: 94 SDHRLSKTEESRQDVPSSSSSLGSDSDPNSGQPENPSRNAASSLVQIWEARTTQ 147
>At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related
similar to ribose-5-phosphate isomerase GI:18654317 from
[Spinacia oleracea]
Length = 276
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 37 RSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETL 147
R+ + + RS S+P ++ S +V QS++LSQ +L+ L
Sbjct: 15 RTPSIALRSTGSSPRTSVSFSVKAQSVALSQDDLKKL 51
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 22 DRSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSF 201
D+SP+ + SPRS VS S I + +S Q+ L+ + Q Q
Sbjct: 72 DKSPNVLNRRSPRSPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEA 131
Query: 202 DVKRLGLTQV 231
+ R L +V
Sbjct: 132 EESRKQLQEV 141
>At4g15840.1 68417.m02409 expressed protein
Length = 660
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 184 QLNQSFDVKRLGLTQVPGASQGPSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREP 363
+++QS ++ + GLT + G SQG S V R + RG + P+EP
Sbjct: 401 RIDQSGEISKDGLTALVGLSQGTSGV-------GNNPRGEQTEGGRGSGATVGMSEPKEP 453
Query: 364 S 366
S
Sbjct: 454 S 454
>At3g19830.1 68416.m02512 C2 domain-containing protein low
similarity to GLUT4 vesicle protein [Rattus norvegicus]
GI:4193489; contains Pfam profile PF00168: C2 domain
Length = 666
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 214 AASRQNFDSIAFVARERTCPCG*ESPSSAATGISTGRSRLLR 89
++S +FD +FV+R CPC E + T R R+LR
Sbjct: 6 SSSCSSFDFPSFVSRRLLCPCSNEHGLIVFSDGFTKRRRILR 47
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 229 VPGASQGPSTV*TRSSASALRGRPDSVSSSRG-ERSATPSPSPREPSKALARVRVTVMMA 405
V G + P T + SS + LR RP S SSR R ATP+ P+ + +R T
Sbjct: 127 VSGNNNKPQT--SSSSVAGLR-RPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASN 183
Query: 406 TTRELMTSR 432
+ TSR
Sbjct: 184 SRSSTPTSR 192
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 36 SLRYQQPPLGRQHAQLQLLNKRDRPVDIPVAAELGDSQPHGHVLS 170
SL Y + L ++HA LLN ++ + E+G +P HVL+
Sbjct: 521 SLLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLN 565
>At3g46540.1 68416.m05052 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to Chain A
Of The Epsin N-Terminal Homology (Enth) Domain
(GI:8569264) [Rattus Norvegicus]; similar to
Af10-protein (GI:1724114) [Avena fatua]
Length = 307
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 434 WRLVISSLVVAIITVTRTLASAFDGSRGDGDGVALLSPLLELTES----GLPLRAEAE 273
WR+ +SL+V +T S D +GD D ++ + ++ E GL +R +AE
Sbjct: 98 WRMAYNSLIVVEHLLTHGPESVSDEFQGDIDVISQMQTFQQIDEKGFNWGLAVRKKAE 155
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 9.0
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +1
Query: 49 NSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVKRLGLTQ 228
N S+++ P SS + S S+ + ++++ +H+ + + S + +Q
Sbjct: 111 NDSHSSLAAPKIASSARAS----SASKASRLSVSQSESGYHSSRPARSSSVTRPSISTSQ 166
Query: 229 VPGASQG--PSTV*TRSSASALRGRPDSVSSSRGERSATPSPSPREPS 366
+ G PS++ SSAS S SSR SA PS R S
Sbjct: 167 YSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSS 214
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 46 TNSPRSAVSTPNSNSSINVTDQSISLSQQNL 138
TNSPR+ + N+N++ + + IS S +NL
Sbjct: 153 TNSPRNCLLVDNNNNTSSCSQVQISSSPRNL 183
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 366 ESAGEGSCNSNDGYNQRTDDKSPPGSDDDTPQQSTDNKKKHRRN 497
E E S + Y + +++ P S +P++S ++KKKH+R+
Sbjct: 47 EEKPEKSKKKSKKYEEVEEEEKSP-SPSPSPKKSKESKKKHKRS 89
>At1g35660.1 68414.m04432 expressed protein
Length = 1155
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 321 RREECDPVPVSPGAVESAGEGSC--NSNDGYNQRTDDK--SPPGSDDDTPQQS-TDNKKK 485
R E CD P E S + ++ DD+ P GS + Q KKK
Sbjct: 219 RMEACDIPPTHREHTEKRSSSSALPAGENSHDNAPDDRLDKPAGSSKQSKQDGFICEKKK 278
Query: 486 HRRN*TTLQPTSFMSW 533
++N ++P + ++W
Sbjct: 279 SKKNKAGVEPVTPLTW 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,525
Number of Sequences: 28952
Number of extensions: 298561
Number of successful extensions: 1345
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -