Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0236
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.7  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 179 IPTKRFDTSNMLYRSDMIM 235
           +PT+R  TSN  Y S  +M
Sbjct: 84  LPTQRTSTSNPTYSSRSVM 102


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 338 PTPLYVMDEIDAALDFKNVSIVANYIKEERRT-LNS*SY 225
           P P Y + EI+  +DF N+     +  ++ +T LN+  Y
Sbjct: 181 PLPSYDIPEINKVVDFINIMSYDYHTADQPQTGLNAPLY 219


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 353 KRKPGPVRITSSRRPINS 406
           K+K G VRI    R INS
Sbjct: 349 KKKDGTVRICLDARMINS 366


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 580 VRLDFLSGFNTIPMKLKEMYQMIT 509
           V +  L+G  T P KL   ++M+T
Sbjct: 93  VAVTVLAGILTTPFKLPYFWKMLT 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,934
Number of Sequences: 336
Number of extensions: 3079
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)