Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0236
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 172 5e-44
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 97 2e-21
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 65 8e-12
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 54 2e-08
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 36 0.006
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 36 0.006
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.85
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.1
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 2.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 6.0
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 7.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 7.9
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 172 bits (418), Expect = 5e-44
Identities = 89/142 (62%), Positives = 105/142 (73%)
Frame = -3
Query: 659 KRAAELDEITTKRNEMRALYEQLRKKRST*FLKRIQYDTNETERDVPNDNMGGDAELELV 480
KR ++ KR +++ + L+ +R F+ + + + MGG+AELELV
Sbjct: 1144 KRDSDYQSELQKRTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAELELV 1203
Query: 479 DSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAA 300
DSLDPFSEG++FSV PP KSWKNISNLSGGEKTLSSLALVFALH YKPTPLYVMDEIDAA
Sbjct: 1204 DSLDPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAA 1263
Query: 299 LDFKNVSIVANYIKEERRTLNS 234
LDFKNVSIVANYIKE RT N+
Sbjct: 1264 LDFKNVSIVANYIKE--RTKNA 1283
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = -2
Query: 255 RTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITIENQ 133
RTKNAQFI+ISLR NMFE+S+RLVGIYKT + TKS+TI N+
Sbjct: 1279 RTKNAQFIVISLRSNMFELSSRLVGIYKTANMTKSVTINNK 1319
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 97.5 bits (232), Expect = 2e-21
Identities = 44/85 (51%), Positives = 64/85 (75%)
Frame = -3
Query: 509 MGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 330
+GG A L L D +P+ GI F PP K ++++ LSGGEKT+++LAL+FA+H Y+P+P
Sbjct: 1096 LGGTAYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIHSYQPSP 1155
Query: 329 LYVMDEIDAALDFKNVSIVANYIKE 255
+V+DEIDAALD NV+ +ANYI++
Sbjct: 1156 FFVLDEIDAALDQTNVTKIANYIRQ 1180
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 240 QFIIISLRYNMFEVSNRLVGIYKTEDCTKSITI 142
QF++ISL+ +F S LVGIY+ + S T+
Sbjct: 1187 QFVVISLKNQLFSKSEALVGIYRDQQENSSRTL 1219
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 65.3 bits (152), Expect = 8e-12
Identities = 39/113 (34%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = -3
Query: 590 RKKRST*FLKRIQYDTNETERDVPNDNM-GGDAELELVDSLDPFSEGIIFSVRPPNKSWK 414
R KRS L++ + N + ++ ++ + G AEL+ ++ + F++G+ V+ WK
Sbjct: 1025 RFKRSA--LEKTWREVNSSFGEIFDELLPGNSAELQPPENKE-FTDGLEIHVKI-GSIWK 1080
Query: 413 N-ISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ ++ LSGG+++L +LAL+ +L YKP P+Y++DEIDAALD + + IK
Sbjct: 1081 DSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLIK 1133
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 273 GKLY*GRTKNAQFIIISLRYNMFEVSNRL 187
G+L + K +QFII+SL+ MF +NRL
Sbjct: 1129 GRLIKTKFKGSQFIIVSLKEGMFTNANRL 1157
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = -3
Query: 413 NISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERRT 243
NI+ LSGG+K+L +L L+FA+ P P ++DE DA LD + S +A +KE +T
Sbjct: 1093 NINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMSKT 1149
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 35.9 bits (79), Expect = 0.006
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = -3
Query: 614 MRALYEQLRKKRS--T*FLKRIQYDTNET-ERDVPNDNMGGDAELE-----LVDSLDPFS 459
++AL E LR++ T F K I T E E + N G ++ L + P +
Sbjct: 965 LQALEETLRRRNEMWTKFRKLITLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPAN 1024
Query: 458 EGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKN 285
+ + KS ++ LSGGEK+ +++ ++ ++ PL +DE D +D N
Sbjct: 1025 RNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVN 1082
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 35.9 bits (79), Expect = 0.006
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Frame = -3
Query: 665 YIKRAAELDEITTKRNEMRALYEQLRKKRST*-------FLKRIQYDTNETERDVPNDNM 507
Y R E++E+ +K ++ E+L+ + ++ + +Q ++ + +
Sbjct: 859 YDARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCISDRFSKGMSGMGY 918
Query: 506 GGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNL-SGGEKTLSSLALVFALHYYKPTP 330
G+ L D D + I+ R K SGGE+++S++ + +L P
Sbjct: 919 AGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQSGGERSVSTIMYLLSLQGLAIAP 978
Query: 329 LYVMDEIDAALDFKNVSIVANYI 261
++DEI+ +D +N +V +I
Sbjct: 979 FRIVDEINQGMDPRNERVVHRHI 1001
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 413 NISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
N S+LSGG+K SLA Y +Y+ D+I +ALD
Sbjct: 703 NGSSLSGGQKQRVSLARAL----YSNAEVYIFDDIFSALD 738
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -3
Query: 401 LSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
LSGG+K +AL A+ Y PT + +MD++ +ALD
Sbjct: 740 LSGGQK--QRIALARAV--YSPTSIVLMDDVFSALD 771
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 234 IIISLRY-NMFEVSNRLVGIYKTEDCTKSITIENQLPEQVRVDGA*IKLVLFCI 76
+ I++R N++E R +G+Y+TED +++ L EQ+ D I L LF I
Sbjct: 678 VAINMRNTNVYE--ERSLGVYRTEDDEGKSFLKDHLTEQLSYDLWYIFLGLFII 729
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 202 LKHVVSKRYDYELSVLRSSLI*FATIETFLKSKAASI 312
L V++R++YE ++L+ T+ET LKS ++++
Sbjct: 289 LSKEVAQRWEYEQTLLKHYAKFLQTLETILKSFSSTL 325
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 464 FSEGIIFSVRPPNKSW-KNISNLSGGEKTLSSLALVFAL 351
F + I+F + P KSW K I N G+K L+ + AL
Sbjct: 690 FGKKILFII-PEAKSWQKKIENTEQGQKALAHVYHALAL 727
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = -3
Query: 407 SNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERR 246
++LSGG++ +AL AL + T + ++DE +ALD ++V + I+ R+
Sbjct: 569 ASLSGGQQ--QRIALARAL--LRDTEILILDEPTSALDPITKNLVMDAIRAHRK 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,283
Number of Sequences: 5004
Number of extensions: 52276
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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