Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0236
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 185 3e-47
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 93 3e-19
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 61 7e-10
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 54 8e-08
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 50 2e-06
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 36 0.024
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 31 1.2
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 31 1.2
05_01_0292 - 2285238-2286023,2286094-2286210 29 2.7
10_08_0934 + 21667688-21667860,21667995-21668093,21668528-216687... 29 4.7
06_02_0063 + 11052916-11053106,11054865-11054945,11055314-110553... 28 6.2
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 28 6.2
11_06_0181 + 20985960-20987825,20987904-20989169 28 8.3
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 8.3
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 28 8.3
07_03_0708 - 20865786-20867153 28 8.3
03_05_0015 - 19750131-19750469 28 8.3
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 185 bits (450), Expect = 3e-47
Identities = 88/146 (60%), Positives = 113/146 (77%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQLRKKRST*FLKRIQYDTNETERDVPNDNMG 504
++K +Y +R EL+ T +R++++ Y+ LRK+R F+ + + + +G
Sbjct: 1131 RTKARVYGERVDELNATTQERDDLKKQYDALRKRRLDEFMAGFNIISLKLKEMYQMITLG 1190
Query: 503 GDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLY 324
GDAELELVDSLDPFSEG++FSVRPP KSWKNI+NLSGGEKTLSSLALVFALH+YKPTPLY
Sbjct: 1191 GDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLY 1250
Query: 323 VMDEIDAALDFKNVSIVANYIKEERR 246
VMDEIDAALDFKNVSIV +Y+K+ +
Sbjct: 1251 VMDEIDAALDFKNVSIVGHYVKDRTK 1276
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/38 (81%), Positives = 37/38 (97%)
Frame = -2
Query: 255 RTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITI 142
RTK+AQFIIISLR NMFE+++RLVGIYKT++CTKSITI
Sbjct: 1274 RTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITI 1311
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 92.7 bits (220), Expect = 3e-19
Identities = 39/86 (45%), Positives = 64/86 (74%)
Frame = -3
Query: 509 MGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 330
+GG A L L + +PF GI ++ PP K ++++ LSGGEKT+++LAL+FA+H ++P+P
Sbjct: 1106 LGGTAYLNLENEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFAIHSFRPSP 1165
Query: 329 LYVMDEIDAALDFKNVSIVANYIKEE 252
+++DE+DAALD NV+ VA +I+ +
Sbjct: 1166 FFILDEVDAALDNLNVAKVAGFIRSK 1191
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/36 (30%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -2
Query: 240 QFIIISLRYNMFEVSNRLVGIYKTED--CTKSITIE 139
Q I+ISL+ + ++ + LVG+Y+ + C++++T +
Sbjct: 1207 QSIVISLKDSFYDKAEALVGVYRDSERCCSRTLTFD 1242
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 61.3 bits (142), Expect = 7e-10
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQL-RKKRST*FLKRIQYDTNETERDVPNDNM 507
+ ED Y ++ + I +++++ + E+L KK+ T LK N+ + + +
Sbjct: 986 EKAEDEYNDLMSKKNIIENDKSKIKTVIEELDEKKKET--LKVTWLKVNKDFGSIFSTLL 1043
Query: 506 GGD-AELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 330
G A+L+ + F +G+ V +++S LSGG+++L +L+L+ AL +KP P
Sbjct: 1044 PGTMAKLDPPEG-GTFLDGLEVRVAFGTVWKQSLSELSGGQRSLLALSLILALLLFKPAP 1102
Query: 329 LYVMDEIDAALDFKNVSIVANYIK 258
LY++DE+DAALD + + IK
Sbjct: 1103 LYILDEVDAALDLSHTQNIGRMIK 1126
>02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERRTLN 237
+++ LSGG+KT+ +L L+FA+ P P Y+ DEIDAALD + + V N I RR +
Sbjct: 942 QSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDTQYRTAVGNMI---RRLSD 998
Query: 236 S*SYRFDTTCLRCRIV 189
+F T R IV
Sbjct: 999 MADTQFIATTFRPEIV 1014
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
+++ LSGG+KT+ +L L+FA+ P P Y+ DEIDAALD
Sbjct: 383 QSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALD 423
>09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 401 LSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
LSGGE++ S+L ALH P MDE D +D
Sbjct: 990 LSGGERSFSTLCFTLALHGMTEAPFRAMDEFDVFMD 1025
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ + NLSGGE L +A+ L KP +Y++DE A LD + + + IK
Sbjct: 462 QEVINLSGGE--LQRVAICLCLG--KPADIYLIDEPSAYLDSEQRIVASKVIK 510
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ + LSGGE L +AL L KP +Y++DE A LD + + A IK
Sbjct: 466 RQVPTLSGGE--LQRVALCLCLG--KPADIYLIDEPSAHLDSEQRLLAAKVIK 514
>05_01_0292 - 2285238-2286023,2286094-2286210
Length = 300
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 476 SLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLS-SLALVFAL 351
++DP E II S +P NK ++ ++GG+ + ++ L FAL
Sbjct: 20 AMDPRPEAIIQSYKPANKLKDKVAIVTGGDSGIGRAVCLCFAL 62
>10_08_0934 +
21667688-21667860,21667995-21668093,21668528-21668736,
21668786-21668925
Length = 206
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 153 TLCSLQFCIYRPNDSTPQTCCIEAI*L*IERSSFFLNIVCH 275
+L ++ C + P+ TP+ CC+ I+ SSF L+ + H
Sbjct: 92 SLVRMKICFF-PSKPTPKWCCVPTAVRLIQCSSFLLHTLFH 131
>06_02_0063 +
11052916-11053106,11054865-11054945,11055314-11055362,
11055468-11055576,11056356-11056408,11056555-11056617,
11057398-11057745
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 524 VPNDNMGGDAELELVDS 474
VPN N+GGDA+ E+ D+
Sbjct: 231 VPNGNVGGDADAEMADA 247
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 401 LSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK--EERRTLNS*S 228
LSGGEK S+A VF K + + DE +ALD + + N +K RT +
Sbjct: 760 LSGGEKQRVSIARVF----LKEPSILLCDEATSALDSTTEASILNSLKTLSVDRTSIFIA 815
Query: 227 YRFDTTCLRC 198
+R TT ++C
Sbjct: 816 HRL-TTAMQC 824
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 443 SVRPPNKSWKNISNLSGGEKTLSSLALVF 357
+ +PPNK+ NISN++ G T S+ LVF
Sbjct: 141 ATQPPNKTDSNISNVA-GSMTPSASVLVF 168
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 506 GGDAELELVDSLDPF-SEGIIFSVRPPNKSWKNISNLSGGE 387
GG++ L + S+DPF EG + S + P K+ + GG+
Sbjct: 249 GGESGLPSLPSMDPFLEEGYLGSYQLPEKAAGGVGGGGGGD 289
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYY 342
K ++NLSG +K+L+++ LVF L YY
Sbjct: 4 KRMTNLSG-KKSLNTVTLVFKLPYY 27
>07_03_0708 - 20865786-20867153
Length = 455
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 117 VLAPVAGSQSL*TLCSLQFCIYRPNDSTPQTC 212
VL P S C+ FC Y P S P+TC
Sbjct: 134 VLQPARSSTFSRLPCNGSFCQYLPTSSRPRTC 165
>03_05_0015 - 19750131-19750469
Length = 112
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 680 SKEDLYIKRAAELDEITTKRNEMRALYEQLRKKRST*FLKRIQYDTN 540
S ++ Y + ELDE+ + + A Y+QL K ++ L + + TN
Sbjct: 64 SAKNAYEQALEELDELRDRYTNLEARYQQLPHKNTSALLVQARATTN 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,258,141
Number of Sequences: 37544
Number of extensions: 311098
Number of successful extensions: 777
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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