Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0236
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 58 9e-09
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08) 51 1e-06
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05) 35 0.056
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 3.6
SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4) 29 3.6
SB_10453| Best HMM Match : Antimicrobial12 (HMM E-Value=2) 28 8.4
SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098) 28 8.4
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 74.9 bits (176), Expect = 6e-14
Identities = 48/103 (46%), Positives = 61/103 (59%)
Frame = -2
Query: 438 TSAEQVLEEHIEFIGRREDVILTGPGFRFTLLQTNASVRHGRDRRGLGLQKRFDRGKLY* 259
+SAE+ LE+H + + RE+ LTGP + L V L L F
Sbjct: 981 SSAEKELEKHFKSVRGRENPELTGPASKTVLAGPVLDV--------LTLDILFQE----- 1027
Query: 258 GRTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITIENQL 130
RTKNAQFIIISLR NMFE+++RL+GIYKT DCTKS+ I +L
Sbjct: 1028 -RTKNAQFIIISLRNNMFELADRLIGIYKTYDCTKSVAINPKL 1069
Score = 44.4 bits (100), Expect = 9e-05
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = -3
Query: 509 MGGDAELELVDSLDPFSEGIIF 444
+GGDAEL+L+DSLDPFSEGI+F
Sbjct: 936 LGGDAELKLMDSLDPFSEGIVF 957
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = -3
Query: 419 WK-NISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
WK ++S LSGG+++L +L+L+ +L +KP PLY++DE+DAALD + + ++
Sbjct: 877 WKESLSELSGGQRSLVALSLILSLLLFKPAPLYILDEVDAALDLSHTQNIGQMLR 931
>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
Length = 493
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ ++ LSGG+K+L +LAL+FA+ P P Y+ DEID ALD + VA I+
Sbjct: 45 REMNQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDPQFRKAVAEMIR 97
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = -3
Query: 356 ALHYYKPTPLYVMDEIDAALDFKNVSIVANYI 261
AL Y+P P +V+DEIDAALD N++ VA +I
Sbjct: 1324 ALENYQPAPFFVLDEIDAALDNTNINKVARHI 1355
>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
Length = 867
Score = 35.1 bits (77), Expect = 0.056
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKN 285
K+ +LSGGE++ S+++ + AL +P +DE D +D N
Sbjct: 758 KDTRSLSGGERSFSTVSFIMALWEAMESPFRCLDEFDVFMDMVN 801
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -3
Query: 386 KTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK--EERRTLNS 234
KT+ +L L++ +HY + ++ + + A F ++ + A++IK E+ +T+ +
Sbjct: 76 KTIYTLLLLYGIHYTLNSQVFAVCVVSVARCFASMLLTASFIKSHEDSKTIKA 128
>SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)
Length = 239
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Frame = -3
Query: 560 RIQYDTNETERDVPNDNMGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNIS-NLSGGEK 384
R+QY++ T+ D+ N + GD+ + V L F GI +K KNI N + G
Sbjct: 117 RVQYESVFTQEDLTNIPVLGDSPYQEVADLTFFGNGI-------HKQLKNIQPNKASGPD 169
Query: 383 TLSSLALVFALHYYKP--TPLYVMDEIDAALD--FKNVSIVANYIKEER 249
++++ L+ A P PL+ +L +K+ ++ A + K R
Sbjct: 170 SVAARILIEAAGELAPLLAPLFRQSYDSGSLPAAWKDANVTAIFKKGHR 218
>SB_10453| Best HMM Match : Antimicrobial12 (HMM E-Value=2)
Length = 180
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = -3
Query: 506 GGDAELELVDSLD-PFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSL-ALVFALHYYKPT 333
GGD E +++ L P +F W +++ + L + A H+Y+PT
Sbjct: 77 GGDCERKVLQELGIPHVNLELFGCPHYETLWSYYDSITPHMEFLWDISAKTCGYHFYQPT 136
Query: 332 PLYVMDEIDAALDFKN--VSIVANYIKEERRTLNS*SYRFDT 213
V + + V + A ++KE++R + S+ F+T
Sbjct: 137 HSTVREPTPTPVHCPRAEVYVFAKWLKEKQRVYSRPSHHFET 178
>SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098)
Length = 661
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 398 SGGEKTLSSLALVFALHYYKPTPLYVMDEID 306
SGGE+++S++ + AL P V+DEI+
Sbjct: 630 SGGERSVSTMLFLMALQELTHCPFRVVDEIN 660
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,759
Number of Sequences: 59808
Number of extensions: 376089
Number of successful extensions: 1131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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