Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0236
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.   208   1e-55
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    93   8e-21
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    71   5e-14
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    64   3e-12
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    33   0.007
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    31   0.027
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    25   1.7  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   1.7  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score =  208 bits (509), Expect = 1e-55
 Identities = 103/148 (69%), Positives = 119/148 (80%)
 Frame = -3

Query: 677  KEDLYIKRAAELDEITTKRNEMRALYEQLRKKRST*FLKRIQYDTNETERDVPNDNMGGD 498
            K + Y+ R A L+EIT KRNEMR LY+ +RKKR T F++     T + +       +GGD
Sbjct: 1095 KREAYLMRVAVLEEITAKRNEMRQLYDDVRKKRFTEFMRGFHIITKKLKEMYQMITLGGD 1154

Query: 497  AELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVM 318
            AELELVDS+DPF+EGI+FSVRPP KSWK ISNLSGGEKTLSSLALVFALHYYKP+PLYVM
Sbjct: 1155 AELELVDSMDPFNEGIVFSVRPPKKSWKMISNLSGGEKTLSSLALVFALHYYKPSPLYVM 1214

Query: 317  DEIDAALDFKNVSIVANYIKEERRTLNS 234
            DEIDAALDFKNVSIVA+YIKE  RT N+
Sbjct: 1215 DEIDAALDFKNVSIVAHYIKE--RTKNA 1240



 Score = 67.7 bits (158), Expect = 3e-13
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -2

Query: 255  RTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITIEN 136
            RTKNAQFIIISLR NMFE+S+ LVGIYK +DCT S+TI+N
Sbjct: 1236 RTKNAQFIIISLRSNMFELSDYLVGIYKVKDCTDSVTIKN 1275


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 93.1 bits (221), Expect = 8e-21
 Identities = 49/140 (35%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
 Frame = -3

Query: 647  ELDEITTKRNEMRALYEQLRKKRST*FLKRIQY--DTNETERDVPNDNMGGDAELELVDS 474
            E +    K  + +A +E+++ +R T F     +  D  +      + N    A L   + 
Sbjct: 1044 EFEAARKKAKKAKAAFEKVKNERCTLFTNCCNHISDAIDAIYKQLSRNEAAQAYLGPDNP 1103

Query: 473  LDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
             +P+ +GI ++   P K ++ +SNLSGGEKT+++LAL+FA+H ++P P +V+DEIDAALD
Sbjct: 1104 EEPYLDGINYNCVAPGKRFQPMSNLSGGEKTIAALALLFAIHSFQPAPFFVLDEIDAALD 1163

Query: 293  FKNVSIVANYIKEERRTLNS 234
              N+  VA+YI+E+   L +
Sbjct: 1164 NTNIGKVASYIREKTTNLQT 1183


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 70.5 bits (165), Expect = 5e-14
 Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
 Frame = -3

Query: 683  QSKEDLYIKRAAELDEITTKRNEMRALYE------------QLRKKRST*FLKRIQYDTN 540
            + KE LY KR AELD    K  E+  L E            Q+    S  F K +     
Sbjct: 994  EQKEKLY-KRKAELDVGKDKICELMQLLEARKVEAIQFTFRQVAANFSEVFKKLVPQGNG 1052

Query: 539  ETERDVPNDNMGGDAELELVDSLDPFSE-GIIFSVRPPNKSWKNISNLSGGEKTLSSLAL 363
                   ND  G D E E V++ D F+  GI  S    +   + ++ LSGG+K+L +LAL
Sbjct: 1053 HLILRTTNDQEGNDMERE-VETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQKSLVALAL 1111

Query: 362  VFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEE 252
            +FA+    P P Y+ DEID ALD ++ S VA+ I E+
Sbjct: 1112 IFAIQKCDPAPFYLFDEIDQALDAQHRSAVADMIHEQ 1148


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 64.5 bits (150), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = -3

Query: 506  GGDAELELVDSLDPFSEGIIFSVRPPNKSWK-NISNLSGGEKTLSSLALVFALHYYKPTP 330
            G  A L   D +D F +G+   V   N  WK +++ LSGG+++L +L+L+ A+  YKP P
Sbjct: 1049 GTQARLVPPDGVD-FMKGLEVKVGF-NGMWKESLTELSGGQRSLVALSLILAMLKYKPAP 1106

Query: 329  LYVMDEIDAALDFKNVSIVANYIK 258
            LY++DE+DAALD  +   + N +K
Sbjct: 1107 LYILDEVDAALDLSHTQNIGNMLK 1130



 Score = 25.0 bits (52), Expect = 2.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 246  NAQFIIISLRYNMFEVSNRL 187
            N+QFII+SL+  MF  +N L
Sbjct: 1135 NSQFIIVSLKDGMFNNANVL 1154


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 33.5 bits (73), Expect = 0.007
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 404  NLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEE 252
            +LSGGE++ +++A + AL     TP + +DE D   D  N   +   +  E
Sbjct: 1032 SLSGGERSYATVAFLIALWSCVSTPFFFLDEYDVFTDQVNRHTITRLLLNE 1082


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.027
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -3

Query: 398  SGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERRTLNS*SYRF 219
            SGGE+ ++      +L +    P   +DEI+  +D  N   V N + EE        Y F
Sbjct: 939  SGGERAVAIAIYTLSLQHMTQVPFRCVDEINQGMDPTNERKVFNMLVEETCRTGQSQYFF 998

Query: 218  DTTCLRCRI 192
             T  L  R+
Sbjct: 999  VTPKLLPRL 1007


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 231 IISLRYNMFEVSNRLVGIYKT 169
           +I   +N F  +N L G+YKT
Sbjct: 168 VIKSEFNQFPENNTLTGVYKT 188


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 231 IISLRYNMFEVSNRLVGIYKT 169
           +I   +N F  +N L G+YKT
Sbjct: 168 VIKSEFNQFPENNTLTGVYKT 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,109
Number of Sequences: 2352
Number of extensions: 11955
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)