Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0236
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 190 6e-49
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 87 8e-18
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 63 2e-10
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 62 3e-10
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 56 2e-08
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 38 0.009
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 36 0.020
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim... 32 0.42
At4g30300.1 68417.m04306 ABC transporter family protein ribonucl... 31 0.56
At5g09930.1 68418.m01148 ABC transporter family protein 31 0.74
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 30 1.3
At3g13640.1 68416.m01718 RNase L inhibitor protein, putative sim... 29 3.9
At3g01140.1 68416.m00018 myb family transcription factor (MYB106... 29 3.9
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 5.2
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,... 28 5.2
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 28 6.9
At5g54670.1 68418.m06807 kinesin-like protein C (KATC) 27 9.1
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 27 9.1
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 27 9.1
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 190 bits (464), Expect = 6e-49
Identities = 91/146 (62%), Positives = 114/146 (78%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQLRKKRST*FLKRIQYDTNETERDVPNDNMG 504
+SK +LY R EL+ +T +R++ R Y++LRK+R F+ + + + +G
Sbjct: 1048 RSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGFNTISLKLKEMYQMITLG 1107
Query: 503 GDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLY 324
GDAELELVDSLDPFSEG++FSVRPP KSWKNI+NLSGGEKTLSSLALVFALH+YKPTPLY
Sbjct: 1108 GDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLY 1167
Query: 323 VMDEIDAALDFKNVSIVANYIKEERR 246
VMDEIDAALDFKNVSIV +Y+K+ +
Sbjct: 1168 VMDEIDAALDFKNVSIVGHYVKDRTK 1193
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/38 (81%), Positives = 37/38 (97%)
Frame = -2
Query: 255 RTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITI 142
RTK+AQFIIISLR NMFE+++RLVGIYKT++CTKSITI
Sbjct: 1191 RTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITI 1228
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 87.4 bits (207), Expect = 8e-18
Identities = 39/86 (45%), Positives = 63/86 (73%)
Frame = -3
Query: 509 MGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 330
+GG A L L + DPF GI ++ PP K ++++ LSGGEKT+++LAL+F++H +P+P
Sbjct: 1114 LGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIH--RPSP 1171
Query: 329 LYVMDEIDAALDFKNVSIVANYIKEE 252
+++DE+DAALD NV+ VA +I+ +
Sbjct: 1172 FFILDEVDAALDNLNVAKVAKFIRSK 1197
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQL-RKKRST*FLKRIQYDTNETERDVPNDNM 507
+ ED Y ++ + I ++++ + E+L KK+ T LK N+ + + +
Sbjct: 990 EKAEDEYNALISKKNTIENDKSKITKVIEELDEKKKET--LKVTWVKVNQDFGSIFSTLL 1047
Query: 506 GGD-AELELVDSLDPFSEGIIFSVRPPNKSWK-NISNLSGGEKTLSSLALVFALHYYKPT 333
G A+LE + + F +G+ V K WK ++S LSGG+++L +L+L+ AL +KP
Sbjct: 1048 PGTMAKLEPPEDGN-FLDGLEVRVAF-GKVWKQSLSELSGGQRSLLALSLILALLLFKPA 1105
Query: 332 PLYVMDEIDAALDFKNVSIVANYIK 258
PLY++DE+DAALD + + I+
Sbjct: 1106 PLYILDEVDAALDLSHTQNIGRMIR 1130
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 62.5 bits (145), Expect = 3e-10
Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQL-RKKRST*FLKRIQYDTNETERDVPNDNM 507
+ ED Y + + I T +++++ + E+L KK+ T LK N+ + + +
Sbjct: 987 EKAEDEYNALMTKKNIIETDKSKIKKVIEELDEKKKET--LKVTWVKVNQDFGSIFSTLL 1044
Query: 506 GGD-AELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 330
G ++LE + F +G+ V + +++S LSGG+++L +L+L+ AL +KP P
Sbjct: 1045 PGTMSKLEPPEG-GTFLDGLEVRVAFGDVWKQSLSELSGGQRSLLALSLILALLLFKPAP 1103
Query: 329 LYVMDEIDAALDFKNVSIVANYIK 258
+Y++DE+DAALD + + IK
Sbjct: 1104 IYILDEVDAALDLSHTQNIGRMIK 1127
>At2g27170.1 68415.m06029 structural maintenance of chromosomes (SMC)
family protein similar to basement membrane-associated
chondroitin proteoglycan Bamacan [Rattus norvegicus]
GI:1785540; contains Pfam profile PF02463: RecF/RecN/SMC
N terminal domain. No suitalble start codon was
identified.
Length = 1207
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/74 (43%), Positives = 44/74 (59%)
Frame = -3
Query: 410 ISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERRTLNS* 231
+ LSGG+KT+ +LAL+FA+ P P Y+ DEIDAALD + + V N I RR +
Sbjct: 1099 MKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLI---RRLADDY 1155
Query: 230 SYRFDTTCLRCRIV 189
+F TT R +V
Sbjct: 1156 GTQFITTTFRPELV 1169
>At5g61460.1 68418.m07712 structural maintenance of chromosomes (SMC)
family protein very strong similarity to SMC-like protein
(MIM) [Arabidopsis thaliana] GI:5880614; contains Pfam
profile PF02463: RecF/RecN/SMC N terminal domain
Length = 1057
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
++ LSGGE++ S+L ALH P MDE D +D
Sbjct: 968 RDTKGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMD 1008
>At5g07660.1 68418.m00877 structural maintenance of chromosomes (SMC)
family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 428 NKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
N + ++ LSGGE++ S+L AL P+ MDE D +D
Sbjct: 965 NSAVRDTRGLSGGERSFSTLCFTLALQNMTEAPIRAMDEFDVFMD 1009
>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 605
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ + NLSGGE L +AL L KP +Y++DE A LD + + + IK
Sbjct: 463 QEVVNLSGGE--LQRVALTLCLG--KPADIYLIDEPSAYLDSEQRIVASKVIK 511
>At4g30300.1 68417.m04306 ABC transporter family protein
ribonuclease L inhibitor - Mus musculus,PIR2:JC6555
Length = 181
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
K+ + LSGGEK +LAL K +Y++DE A LD + I + IK
Sbjct: 111 KSFNKLSGGEKQRVALALCLG----KSADIYLIDEPSAFLDSEQRIIASKVIK 159
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -3
Query: 416 KNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEERRTL 240
+ +S LSGGEK L F KP+ L V+DE LD + ++ I E + T+
Sbjct: 525 RKVSLLSGGEKA----RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTV 579
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQL 591
+S E+ ++ E+DE TTKR E+ AL++ L
Sbjct: 212 KSAEESLEQKGREIDEATTKRMELEALHQSL 242
>At3g13640.1 68416.m01718 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 603
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 410 ISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIK 258
+ LSGGEK ++ L KP +Y++DE A LD + + IK
Sbjct: 463 VKTLSGGEKQRVAITLCLG----KPADIYLIDEPSAHLDSEQRITASKVIK 509
>At3g01140.1 68416.m00018 myb family transcription factor (MYB106)
similar to transforming protein (myb) homolog GB:S26605
from [Petunia x hybrida]
Length = 345
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 545 TNETERDVPNDNMG-GDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSL 369
T +T + N G GD +LE S FSE ++ + P S +N +N + + L
Sbjct: 193 TQKTSTNWTKPNQGNGDQQLESPTSTVTFSENLLMPLGIPTDSSRNRNNNNNESSAMIEL 252
Query: 368 AL 363
A+
Sbjct: 253 AV 254
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 398 SGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 294
SGGE+++S++ + +L P V+DEI+ +D
Sbjct: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMD 975
>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
At5g44890, At2g29240, At1g08740; similar to EST
gb|N96641
Length = 748
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 464 FSEGIIFSVRPPNKSWKNISNLSGGEKTLSSL 369
F +GI F + KSW+ ++ G ++T SSL
Sbjct: 285 FVQGIEFGAKALRKSWEGNLDIRGSDRTKSSL 316
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 683 QSKEDLYIKRAAELDEITTKRNEMRALYEQLRKK 582
+S E+ K+A E+DE TT+ E+ AL++ K
Sbjct: 299 KSSEERLEKQAREIDEATTRSIELEALHKHSELK 332
>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
Length = 754
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 671 DLYIKRAAELD-EITTKRNEMRALYEQLRKKRST*FLKRIQYDTNETERDVPNDNMGGDA 495
+L K +++ + K E+ + E+LRK + ++Q +TE+ ND++G +
Sbjct: 104 ELNEKHCVDMEVSLKNKEEELNMIIEELRKNFES---VQVQLAREQTEKLAANDSLGKEK 160
Query: 494 ELEL 483
E L
Sbjct: 161 EARL 164
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 585 LPELFIKCPHFVSFSSYLVQFGG 653
+PELF CP+ + +V FGG
Sbjct: 162 IPELFKTCPNSTKYMKTVVSFGG 184
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter, PF00664:
ABC transporter transmembrane region
Length = 1495
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -3
Query: 404 NLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKEE 252
N S G++ L SLA + + + V+DE A++D + S++ I+EE
Sbjct: 1371 NFSVGQRQLLSLARALL----RRSKILVLDEATASVDVRTDSLIQRTIREE 1417
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,388
Number of Sequences: 28952
Number of extensions: 263356
Number of successful extensions: 787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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