Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0235
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   6.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   6.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   6.6  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 361 VTLRRTSPIGINRLELSEWLRRTQRRSRTAPDPCPP 468
           VTL  T  +G++  EL ++L+   R +R  P  C P
Sbjct: 688 VTLGGTPYVGVHSSELLDFLKSGNRLAR--PANCSP 721


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 412 EWLRRTQRRSRTAPDP 459
           EW+++T  +S+  P+P
Sbjct: 125 EWIKKTSYQSQPNPEP 140


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 412 EWLRRTQRRSRTAPDP 459
           EW+++T  +S+  P+P
Sbjct: 125 EWIKKTSYQSQPNPEP 140


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 356 RK*RYAGRVQLGSIDSSCRNG*DGLRDDPERHRTPVHRGGRRALEAASGRHDADV 520
           +K R   RVQ  SI + C         +P     PVHR GR         +D+D+
Sbjct: 72  KKRRIVARVQCRSIKNEC--------PEPTCDE-PVHRPGRCCKTCPGDLYDSDI 117


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 488 EAASGRHDADVREMERRKRVEALMSSKLFREELERVLDQQMH 613
           E +   H  D +    +KR   ++ SK    ELER   QQ +
Sbjct: 23  EDSKDPHLTDQQASGHKKRKRRVLFSKAQTYELERRFRQQRY 64


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 422 DGLRDDPERHRTPV 463
           +GLRD P ++ TP+
Sbjct: 53  EGLRDCPRKYSTPL 66


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 422 DGLRDDPERHRTPV 463
           +GLRD P ++ TP+
Sbjct: 49  EGLRDCPRKYSTPL 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,210
Number of Sequences: 336
Number of extensions: 3043
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)