Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0235
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.0
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 27 3.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.1
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.1
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 26 5.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 9.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 9.4
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.4
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 518 VREMERRKRVEALMSSKLFREELERVLDQQMHEGG 622
+++ + RK+V A+ + KL +E +E+ +M +GG
Sbjct: 484 LKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGG 518
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 420 ETDSETIPNGTGPLSTEEEDERLKQRPADMTPMSAKWNAGSASKLSCPRSC 572
+ SE P ++T+ DER+K+ + WN A ++S P C
Sbjct: 37 KVSSEQSPTPDVTITTKTLDERIKEDDELSKEVEEAWNQIMAERISEPIHC 87
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 348 EDSGSNVTQDESNWDQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADMTPMSAK 527
E SGS + DES+ + + +E + + + + ED +D S+
Sbjct: 101 EASGSGSSSDESDSSS-SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSS 159
Query: 528 WNAGSASKLSCPRSCSAKNWNGSSTS 605
+ S+S S S S+ N SS+S
Sbjct: 160 EGSDSSSSSSSSESESSSEDNDSSSS 185
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 431 RDDPERHRTPVHRGGRRALEAA-SGRHDADVREMERRKRVEALMSSKLFREELERVLDQ 604
+ + ER + + R LE + R + +++E+E+++++EA + +E+ + LD+
Sbjct: 88 QQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALDE 146
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 463 PPRRKTSA*SSVRPT*RRCPRNGTPEARRSSHVLEA 570
P + KTS SS+ PT R +P A SSH+ A
Sbjct: 811 PVQPKTSQASSILPTVPRTTSYTSPYATTSSHITPA 846
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 425 RLSHSDSSSLLIPIGLVLRNVTSGIFATTAAQRKYCTSTCQARPGLVIR 279
RL DSS+L + L SG + + Q +Y S+C P +V R
Sbjct: 135 RLLQLDSSNLEYRLCFTLSAFLSGNYKESLEQIQYLISSCNLSPLVVSR 183
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 487 KRSSSSSVDRGPVPFGIVSESVSAIPTARVY*SQLDSSCVTLLPESSQRRQRNVNIAH 314
++SSSSS ++ S SA PT+ L SS +L+ SS + +++H
Sbjct: 89 QQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSH 146
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -3
Query: 583 FFAEQLRGHESFDALPAFHFADIGVMSAGRCFKRSSSSSVDRGPVPFGIVSESVSA 416
FF QL+ +++ + + +F D GVM + ++ + + + PFG +S++ S+
Sbjct: 258 FFTLQLQFYQTREFIAKDNFGDSGVMIPAKLYRVTYDTLLKH---PFGSLSDAQSS 310
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 643 PLQKRSVAAF-VHLLVEDPFQFFAEQLRGHESF-DALPAFHFADIGVMSAGRCFKRSSSS 470
P+ R A + +V+D FQ E+L G S+ D FHF+DI ++ F S++
Sbjct: 58 PVSDRKDALLNIPTVVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCLSAA 116
Query: 469 SVDRGPVPFGIVSESVSAIPTARV 398
G V +++S T+++
Sbjct: 117 LEPLMTWTTGKVFDALSQYATSQI 140
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 217 DDHYTQNSHTNLNGDRNRH 161
DDH +Q+ HT+ N + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542
>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 514 RCPRNGTPEARRSSHVLEAVPRRIGT 591
RC RNG E R +H +PR + +
Sbjct: 73 RCLRNGRTEVRLYTHYKRHLPRSVNS 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,805
Number of Sequences: 5004
Number of extensions: 52397
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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