Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0235
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 33 0.26
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 33 0.26
12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763... 31 0.79
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 31 0.79
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 30 1.4
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 30 1.8
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 29 2.4
02_01_0085 + 610872-611297 29 3.2
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 29 3.2
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 29 4.2
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 29 4.2
04_04_0424 + 25117260-25117332,25117466-25117719,25117849-251179... 28 5.6
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 28 7.4
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 28 7.4
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 27 9.7
03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170... 27 9.7
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 27 9.7
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 534 AGSASKLSCPRSCSAKNWNGSSTSRCTKAATLRFCRGS 647
AG + + SC RSC++ +ST RCT+A +R C+G+
Sbjct: 575 AGRSWRASCCRSCTS-----TSTLRCTQAMAIRRCQGA 607
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 449 HRTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELERV 595
H+T +HR RR LE A R + E + V + ++ F E+L RV
Sbjct: 176 HQTALHRFARRILEVALSRKEKKATETRAYQAVPIVKTTWPFAEQLSRV 224
>12_01_1063 +
10974522-10974776,10975094-10975599,10976243-10976321,
10976337-10976633,10976712-10976976,10977055-10977425
Length = 590
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 449 HRTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELERV 595
H+T +HR RR LE R + + E + V + ++ F E+L RV
Sbjct: 349 HQTALHRFARRILEVVLSRKEKEAAETRACQDVPNVKTAWPFAEQLSRV 397
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 459 LSTEEEDERLKQRPADMTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTKAA 623
L+ EE+ E++ ++ S++ S SC R A+NWN S+ K+A
Sbjct: 17 LTLEEQQEKINDLRKELGEHSSEEIQDFLSDASCLRFLRARNWNVQKASKMMKSA 71
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 449 HRTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDA 628
H+T +HR RR L+ R D + E + V + + F E+L RV + + + +
Sbjct: 664 HQTALHRFARRMLDVVVSRKDKESAETRGCEGVPIVKTPWPFAEQLSRVYTRAVFKVFED 723
Query: 629 SL 634
SL
Sbjct: 724 SL 725
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 184 NLCVNFVCSDHLICRYA 234
NLC +C +H +CRYA
Sbjct: 467 NLCWKLICMEHAVCRYA 483
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 497 SGRHDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDA 628
+G H D +KR K F + + +L QQMH GG A
Sbjct: 106 NGCHSKDKFTFVVKKRKLIRTKQKFFEQNVGVILQQQMHSGGGA 149
>02_01_0085 + 610872-611297
Length = 141
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +1
Query: 421 RRTQRRSRTAPDP---CPPRRKTS 483
RR RSR APDP CPP R+ S
Sbjct: 82 RRRSARSRAAPDPPTSCPPSRQIS 105
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 559 HESFDALPAFHFADIGVMSAGRCF 488
+ S + LP FHFADIG + R F
Sbjct: 306 YRSLELLPIFHFADIGGNNQNRTF 329
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 521 REMERRKRVEALMSSKLFREELERVLDQQMHEGGDA 628
REMERR R+ ALM L+R+L Q E G A
Sbjct: 118 REMERRDRLRALMVRLEADGHLDRLLRAQEEEQGAA 153
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 521 REMERRKRVEALMSSKLFREELERVLDQQMHEGGDA 628
REMERR R+ ALM L+R+L Q E G A
Sbjct: 118 REMERRDRLRALMVRLEADGHLDRLLRAQEEEQGAA 153
>04_04_0424 +
25117260-25117332,25117466-25117719,25117849-25117907,
25118206-25118303,25118378-25118467,25118927-25119225,
25119660-25119881
Length = 364
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 452 RTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAS 631
++ V G LE SGR +VR R + K R +++ +LD + E +
Sbjct: 257 KSDVFSYGVLLLEILSGRRPIEVRRAARERITVRWAFEKYNRGDVKEILDPMLTESVNED 316
Query: 632 LLQRI 646
+L +I
Sbjct: 317 ILNKI 321
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 267 GLVLPDY*PRSCLTSRCAIFTLRCRRCEDS 356
G DY PR C S C + L C C+DS
Sbjct: 361 GSSFDDYSPR-CRCSHCRMLVLVCSTCQDS 389
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 422 DGLRDDPERHRTPVHRGGRRALEAASGRHDADVREMERR--KRVEALMSSKLFREELE 589
DG +R P GGR A+ R D D + E R KRV+ ++ RE E
Sbjct: 92 DGAPSSRDRGPPPPRGGGRAGARRAASRDDGDFDDDEPRSWKRVDEAELARRVREMRE 149
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -2
Query: 626 RRRLRASAGRGPVPI--LRGTA 567
R R+RA GR PVP+ LRGTA
Sbjct: 165 RLRIRAGEGRPPVPLGELRGTA 186
>03_05_0311 +
23014666-23014806,23015454-23015959,23016661-23017051,
23017192-23017292,23017542-23017644,23018048-23018120,
23018244-23018659
Length = 576
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 449 HRTPVHRGGRRALEAASGRHDADVREME--RRKRVEALMSSKLFREELERVLD 601
H+T +HR RR LE + R + + E R+ + +LF E L+ D
Sbjct: 316 HQTALHRFARRMLEVITDRKEKEAAETRACSMSRLYTRAAFRLFEEVLQDSTD 368
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 431 RDDPERHRTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELER--VLDQ 604
+ + ER R R+ L RH A + E ER + + ++ REE +R +++
Sbjct: 500 KQEEERERLIREEEERQRLVEEEARHAAWLAEQERLEAAKRAEEQRIAREEEKRKAAIEE 559
Query: 605 QMHEGGDASLLQRI 646
+ + G LQ +
Sbjct: 560 ERRKEGARKKLQEL 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,405
Number of Sequences: 37544
Number of extensions: 395580
Number of successful extensions: 1479
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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