Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0235
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 38 0.005
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 38 0.005
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 38 0.005
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 38 0.005
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 38 0.005
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 38 0.005
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 38 0.005
L16621-7|ABA00181.1| 300|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.8
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 29 3.8
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 28 6.6
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 28 6.6
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 515 DVREMERRKRVEALMSSKLFREELERVLDQQ 607
D+ EMERRKRV+ ++ SK F ELE V+ Q+
Sbjct: 35 DLSEMERRKRVQQILESKSFCHELEEVIRQE 65
>L16621-7|ABA00181.1| 300|Caenorhabditis elegans Hypothetical
protein ZK688.10 protein.
Length = 300
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -1
Query: 474 PPRWTGVRCRSGSSLSPSQPFRQLESIDPNWTR 376
PP+++ + +SG + +P + QL+ +D NW++
Sbjct: 264 PPKYSSLTTKSGCTETPPPGYSQLDCMDDNWSQ 296
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 522 AKWNAGSASKLSCPRSCSAKNWNGSSTSRCTKAA---TLRFCRGS 647
A W AGS + +SCP + + G+S S CT +A L C GS
Sbjct: 1275 APWTAGSTATMSCP---AGQTVIGTSISYCTNSAWSPALGSCSGS 1316
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 446 RHRTP-VHRG---GRRALEAASGRHDADVREMERRKRVEALMSSKLFREELER 592
R R P VHR GRR++ GR++ D E K E L S++L + LER
Sbjct: 207 RARRPMVHRPAPYGRRSISQGPGRNNDDWGSREYGKYAERLASTELKKLHLER 259
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 79 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 225
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 231 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 281
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 79 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 225
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 233 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 283
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 340 VVAKIPEVTLRRTSP--IGINRLELSEWLRRTQRRSRTAPDPCPP 468
+ +++ E + +TSP IG+ L+LS+ L + S+T P P
Sbjct: 437 MTSRLAESAMTQTSPRRIGVEPLDLSQLLEKHNSSSQTTPPVVEP 481
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 340 VVAKIPEVTLRRTSP--IGINRLELSEWLRRTQRRSRTAPDPCPP 468
+ +++ E + +TSP IG+ L+LS+ L + S+T P P
Sbjct: 435 MTSRLAESAMTQTSPRRIGVEPLDLSQLLEKHNSSSQTTPPVVEP 479
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 424 RTQRRSRTAPDPCPPRRKTSA*SSVRPT*RRCPRNGTPEARRSSHVLEAVPRR 582
R +R + P P RR++ + S P RR P + R A PRR
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRR 490
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical protein
C04A11.3 protein.
Length = 1228
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 461 VHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELER 592
+ R R+ +E G + ++R ++R R+E + F+E L++
Sbjct: 886 MERRQRKEIEDTEGAQEHELRNAQKRLRIEQEKDMRAFKERLKQ 929
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 340 VVAKIPEVTLRRTSP--IGINRLELSEWLRRTQRRSRTAPDPCPP 468
+ +++ E + +TSP IG+ L+LS+ L + S+T P P
Sbjct: 437 MTSRLAESAMTQTSPRRIGVEPLDLSQLLEKHNSSSQTTPPVVEP 481
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 340 VVAKIPEVTLRRTSP--IGINRLELSEWLRRTQRRSRTAPDPCPP 468
+ +++ E + +TSP IG+ L+LS+ L + S+T P P
Sbjct: 435 MTSRLAESAMTQTSPRRIGVEPLDLSQLLEKHNSSSQTTPPVVEP 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,066
Number of Sequences: 27780
Number of extensions: 319773
Number of successful extensions: 1118
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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