Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0235
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 548 EALMSSKLFREELERVLDQQMHEGGDASLL 637
           E L  +K+ +EE+  +LD+ +    D + L
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSDITEL 467


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 548 EALMSSKLFREELERVLDQQMHEGGDASLL 637
           E L  +K+ +EE+  +LD+ +    D + L
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSDITEL 173


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 416 HSDSSSLLIPIGLVLRNVTSGIFATTAAQRKYCTSTCQARPGLVIR*HESFRSHH 252
           H  +SS  +P  +     T+     TAA     T+T   +   + R H   ++HH
Sbjct: 95  HPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQR-HHHLQNHH 148


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 431 RDDPERHRTPVHRGGRRALEAASGRHDADVREMERRKRVEA 553
           RD   ++   ++    R      G   ++ REME+R+ V A
Sbjct: 367 RDANRQNSCNIYNASSRMENNLRGETQSNYREMEKRQSVPA 407


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 312 RCAIFTLRCRRCEDSGSNVTQDESN 386
           R A + L CR+C  S +N+  D SN
Sbjct: 367 RLAFWRLTCRKCFKSRTNL--DPSN 389


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 240 ICWTVMTP 263
           ICWT+ TP
Sbjct: 493 ICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 240 ICWTVMTP 263
           ICWT+ TP
Sbjct: 546 ICWTITTP 553


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 129 ALIVLFIIFTALA*QTPHVQALF 61
           ALI + I+ TAL   T  +  LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,056
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)