Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0235
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 33 0.16
At2g26190.1 68415.m03145 calmodulin-binding family protein conta... 31 0.66
At1g68430.1 68414.m07817 expressed protein 30 1.5
At3g03130.1 68416.m00309 expressed protein ; expression supporte... 29 2.0
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 3.5
At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG... 29 3.5
At4g12020.1 68417.m01912 protein kinase family protein similar t... 28 4.7
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 28 4.7
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 28 4.7
At4g38430.1 68417.m05431 expressed protein contains Pfam profile... 28 6.1
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 6.1
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 27 8.1
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 27 8.1
At2g40480.1 68415.m04996 expressed protein contains Pfam profile... 27 8.1
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 414 MAETDSETIPNGTGPLSTEEEDERLKQRPADMTPMSAKWNAGSASK 551
MAE D + T P + EEEDE +++P D P+ N K
Sbjct: 70 MAEGDDDQAEEETNPEAEEEEDEEEEEKPDDACPVGDSVNVTGKGK 115
>At2g26190.1 68415.m03145 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 532
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 420 ETDSETIPNGTGPLSTEEEDERLKQRPADMTP--MSAKWNAGSASKLSCPR 566
E ++E P T ++ E+E+E+ ++RP +S KWN+G ++ C R
Sbjct: 420 EEEAEKKPAET-IVTEEQEEEKERERPVFQLAKRLSCKWNSGVGPRIGCVR 469
>At1g68430.1 68414.m07817 expressed protein
Length = 146
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 468 EEEDERLKQRPAD--MTPMSAKWNAGSASKLSCPRSCSAKNWNGSS 599
+EEDER K + + + M+AK NA AS+L C + +A W G S
Sbjct: 86 QEEDERPKGKTKEEVLAAMAAKLNA--ASRLQCESADAAPVWFGFS 129
>At3g03130.1 68416.m00309 expressed protein ; expression supported
by MPSS
Length = 520
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 452 RTPVHRGGRRALEAASGRHDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDA 628
+TP R RRA AAS + D V+ + +R L+ + L+ + + HE A
Sbjct: 138 KTPAARSTRRAQAAASSKKDESVQRVYSTRRSVRLLEESMADLSLKTNVPVKKHEDSPA 196
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 593 PVPILRGTASRT*ELRRASGVPFRGHRRHVGRTL 492
P L GT++ + LRR S + G RRH R L
Sbjct: 13 PTFFLSGTSTSSPSLRRLSSISVSGFRRHSNRKL 46
>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
/ V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
proton pump G subunit 2) [Arabidopsis thaliana]
Length = 106
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 449 HRTPVHRGGRRALEAASGRHDADVREMER 535
H+T +G +R LEA SG A+V+ +E+
Sbjct: 45 HKTSTEQGFQRKLEATSGDSGANVKRLEQ 73
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 507 MTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTKAATL 629
++ + +N + +L+ P SC+ K W G CT ++L
Sbjct: 1217 LSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSL 1257
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 534 AGSASKLSCPRSCSAKNWNGSSTSRCTKAATLR 632
AG ++ +SC + K W+G S CT+ TLR
Sbjct: 93 AGESTLVSCSSDTTVKTWDGLSDGVCTR--TLR 123
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 534 AGSASKLSCPRSCSAKNWNGSSTSRCTKAATLR 632
AG ++ +SC + K W+G S CT+ TLR
Sbjct: 93 AGESTLVSCSSDTTVKTWDGLSDGVCTR--TLR 123
>At4g38430.1 68417.m05431 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 548
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 453 GPLSTEEEDERLKQRPADMTPMSAKWNAGSASKLSCPR 566
G LS+EE+DE +R +P + + S+S SC R
Sbjct: 2 GSLSSEEDDEVSSERCGSYSPSADISESESSSSFSCHR 39
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +1
Query: 370 RRTSPIGINRLELSEWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPT*RRCPRNGTPEARR 549
R SPI +R E R++ SR P PP R+ + S P RR R+ +P ARR
Sbjct: 284 RSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSP--PARRR--RSPSPPARR 339
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 234 RAICWTVMTPEGLVLPDY*PRSCLTS 311
R+ WT EGL++P+Y P LTS
Sbjct: 358 RSRVWTREEREGLIMPEYRPIDILTS 383
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Frame = +2
Query: 455 TPVHRGGRRALEAASGRHDADVREMERRKRV--------EALMSSKLFRE-ELERVLDQ 604
T V GRR A HD+ E++R R+ EA + K RE ELER+L++
Sbjct: 923 TNVRNNGRRESLAKRQEHDSPSMELKRELRMSKERELSYEAALGEKEQREAELERILEE 981
>At2g40480.1 68415.m04996 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 541
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 491 AASGRHDADVREMERRKRVEALMSSKLFREELERVLDQQ 607
AA D V+E+E +EAL S+K E+L+R L Q+
Sbjct: 126 AAELEKDLIVKELETLDVLEALGSTKRIVEDLKRQLQQE 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,467
Number of Sequences: 28952
Number of extensions: 293221
Number of successful extensions: 925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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