Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5SCA1 Cluster: Anaphase promoting complex subunit 6/ce...    34   3.5  
UniRef50_Q1MVX1 Cluster: Integron integrase; n=2; uncultured bac...    33   6.1  
UniRef50_A0T7P8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_A0AW82 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_Q5SCA1 Cluster: Anaphase promoting complex subunit 6/cell
           division cycle protein 16- like protein; n=2;
           Ostreococcus|Rep: Anaphase promoting complex subunit
           6/cell division cycle protein 16- like protein -
           Ostreococcus tauri
          Length = 620

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 419 RLRLFTAWCCH*QRAGEHAAR-LSGGHETREDDDVFLRLAGAGHDNSPQGIVKELAIKRR 595
           R RL  A C H  R+ E A R L GG E   DDD   R      D SP       A++ +
Sbjct: 77  RGRLLAARCLHGMRSHEEAVRALDGGAEENSDDDARARYLALA-DGSPTDAAAMCALRGK 135

Query: 596 YRWKHQSR 619
                +SR
Sbjct: 136 AHEAMESR 143


>UniRef50_Q1MVX1 Cluster: Integron integrase; n=2; uncultured
           bacterium|Rep: Integron integrase - uncultured bacterium
          Length = 238

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 465 PALCQWQHQAVNKRRRVYAHERYINM*TRDRRDSENMTTFLTLYVIK--FYTHLFFSSRD 292
           PA   + H+A  KRRR + HE  I    R    +  M+  +T +  +  F THL  S  D
Sbjct: 156 PATSAYLHEATRKRRRHHLHETVIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSD 215


>UniRef50_A0T7P8 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia ambifaria MC40-6|Rep: Putative
           uncharacterized protein - Burkholderia ambifaria MC40-6
          Length = 153

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -1

Query: 559 GRVIVSGAR*SQEHVVVLARLVAPGEAGGVLAGSLSVATPS 437
           G+V+ SG+   +  VVV  R VA G A G+ AG ++ AT S
Sbjct: 34  GKVVTSGSEMLECQVVVALRRVAGGRASGLDAGGMARATAS 74


>UniRef50_A0AW82 Cluster: Putative uncharacterized protein; n=1;
           Arthrobacter sp. FB24|Rep: Putative uncharacterized
           protein - Arthrobacter sp. (strain FB24)
          Length = 168

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 517 VVVLARLVAPGEAGGVLAGSLSVATPSGKQ 428
           +V  ARL AP E GG+L G  +V  P+G++
Sbjct: 20  LVEQARLYAPAETGGILVGHYTVTKPNGQR 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,727,074
Number of Sequences: 1657284
Number of extensions: 12397565
Number of successful extensions: 29365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29358
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)