Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.14 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.73 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   6.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 261 LICVCYFHY*MMTKLCSVFFYNA 193
           L+C  YF+Y  +  LC  +FY A
Sbjct: 97  LLCTYYFYYAFIILLCVYYFYYA 119



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 261 LICVCYFHY*MMTKLCSVFFYNA 193
           L+C+ YF   +   LC  +FY A
Sbjct: 130 LLCIYYFVVPLFFLLCIYYFYCA 152



 Score = 22.6 bits (46), Expect(2) = 0.54
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 261 LICVCYFHY*MMTKLCSVFFYNA 193
           L+C+ YF+  ++  LC  +F  A
Sbjct: 282 LLCIYYFYCALIILLCIYYFCRA 304



 Score = 21.8 bits (44), Expect(2) = 0.25
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 270 F*VLICVCYFHY 235
           F +L+CV YF+Y
Sbjct: 107 FIILLCVYYFYY 118



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 269 FKF*YASVIFITR**PSFALFFFITPSRHLVCL 171
           + F YA +IF         +++F+ P   L+C+
Sbjct: 114 YYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 261 LICVCYFHY*MMTKLCSVFFYNA 193
           L+C+ YF   ++   C  +FY+A
Sbjct: 196 LLCLDYFTLHLLFLPCIYYFYSA 218



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 264 VLICVCYFHY*MMTKLCSVF 205
           +L+C+ YF+Y M    C  F
Sbjct: 254 LLVCIYYFYY-MHLLFCCAF 272



 Score = 20.6 bits (41), Expect(2) = 0.54
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 264 VLICVCYFHY 235
           +L+C+ YF+Y
Sbjct: 234 ILLCIYYFYY 243


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 385 SHINISFMGVYP 420
           +HIN +F+GVYP
Sbjct: 54  THINYAFLGVYP 65


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 414 IPAFACLPL 440
           IPAF CLPL
Sbjct: 217 IPAFTCLPL 225


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 414 IPAFACLPL 440
           IPAF CLPL
Sbjct: 217 IPAFTCLPL 225


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 41  YRPPKPLYTKFY 6
           Y PP P+YT  Y
Sbjct: 162 YPPPPPVYTHHY 173


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +1

Query: 616 PWLQ-CTHLAEGHAG 657
           P LQ CTHL  G+AG
Sbjct: 45  PALQFCTHLIYGYAG 59


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 643 PPGVCTAATALVFPPITA 590
           PP +  AA A + PP TA
Sbjct: 126 PPTLPAAAAAALLPPQTA 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,492
Number of Sequences: 336
Number of extensions: 3275
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)