Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        30   0.26 
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    27   3.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   5.5  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   9.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.7  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   9.7  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +2

Query: 467 EHAARLSGGHETREDDDVFLRLAGAGHDNSPQGIVKELA 583
           EH   L  G    ED DV +   GA    SP  I KELA
Sbjct: 592 EHQVELLVGEYGEEDPDVIVCYIGADDGKSPDQIQKELA 630


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 165 RLVTLN*EK*YYYSPIDVGKS*LLKTRIKQH 73
           +LVTL  +    + P  VGKS LLK  +K H
Sbjct: 12  KLVTLKLKPVVVFGPSGVGKSTLLKRLLKDH 42


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 49  LATIYFQKMLFYSCFQ*STLPDIYWRIIILFFLI 150
           LA   F  M+F+S    ST+P   W ++I  +L+
Sbjct: 412 LAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLL 445


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 313 FVFQFARFVAIIKLILSFNMRLLFSLLDDDQALLCFFL*RHRAILFVFKA 164
           + F F     I  + LS    LL S+ ++ + +LC FL R     F FK+
Sbjct: 48  YTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKS 97


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 319 YPFVFQFARFVAIIKLILSFNMRLLFSLLDDDQALLCFFL*RHRAI-LFVFKAVSYPQL 146
           Y  ++ F+   +++   L       F L DDD ALL  +  RH  + LF    +  P L
Sbjct: 314 YAHLYSFSSVKSVVHW-LQIIKNCTFQLYDDDMALLAGYGSRHYQVPLFPTNNIKCPML 371


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 124 ANRCREELIIENTNKTTFSGN 62
           ++RCR++   +N N+T F GN
Sbjct: 395 SDRCRQQESKDNGNRTVFLGN 415


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 296 RELKNKWV*NLITYNVKKVVIFSLSRLSLVHILIYRSWAY 415
           RE+ N W    +T  VKKV+    S+     +L++ S  Y
Sbjct: 17  REINNMWPGQAMTLKVKKVLYAGKSKYQ--DVLVFESETY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,111
Number of Sequences: 5004
Number of extensions: 50465
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)