Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0035 - 25268882-25268988,25269698-25269812,25270208-252702...    29   2.5  
08_02_0764 - 20938110-20938371,20939783-20939933,20940521-20940596     29   4.3  
01_07_0140 - 41387166-41388488                                         28   7.6  

>02_05_0035 -
           25268882-25268988,25269698-25269812,25270208-25270276,
           25271409-25271511,25271904-25272205
          Length = 231

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 489 PERRAACSPALCQWQHQAVNKRRRVYAHERYINM*TRDRRD 367
           PE+        CQW        RR    E Y+   TRDR+D
Sbjct: 119 PEKTVRDVAMRCQWMAAKKENTRRRKTDEHYLGKKTRDRKD 159


>08_02_0764 - 20938110-20938371,20939783-20939933,20940521-20940596
          Length = 162

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 514 VVLARLVAPGEAGGVLAGSLSVATPSGKQAKAGIR 410
           + LA   APG+ GGVL   +   TP G+Q++  +R
Sbjct: 43  MALAAAAAPGKGGGVLDRPIEKVTP-GRQSEFDVR 76


>01_07_0140 - 41387166-41388488
          Length = 440

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 628 TAATALVFPPITAFDCKFFDDSLG 557
           T    +  PP+T+FDC++F  ++G
Sbjct: 122 TDGAQVPLPPVTSFDCEYFVTAVG 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,843
Number of Sequences: 37544
Number of extensions: 356988
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)