Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical
           protein D2063.2 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 66  PENVVLFVFSIINSSRHLLANNNTIFLN 149
           P N+V F+F+I+ +S  L++ ++TI  N
Sbjct: 243 PTNIVRFLFTILTASLMLISADDTILSN 270


>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 492 PPERRAACSPA-LCQWQHQAVNKRRRV 415
           P E  AA  P  +CQW H  + K +RV
Sbjct: 376 PAEASAAVKPRFVCQWSHARLKKAQRV 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,880
Number of Sequences: 27780
Number of extensions: 292487
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)