Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0234
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24250.1 68418.m02853 hypothetical protein                          29   2.7  
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    28   6.3  
At3g29750.1 68416.m03756 hypothetical protein                          28   6.3  

>At5g24250.1 68418.m02853 hypothetical protein 
          Length = 226

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 275 FNYGHESRELKNKWV*NLITYNVKKVVIFSLSRLSLVHILIYRSWAYTRLRL 430
           F++    R L   W+ N I ++ +++ +   +R+ ++ I +   W YTRL +
Sbjct: 166 FDFRFSRRCLFRSWMMNCIGFDDREMCVEIRNRVLILEIYVAILWRYTRLMI 217


>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
           (IRX3) identical to gi:5230423
          Length = 1026

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 640 PGVCTAATALVFPPITAFDCKFFDDSLGRVIVSG 539
           P +C      + PPI+ F   FF      +IV+G
Sbjct: 820 PAICLLTDKFIMPPISTFASLFFISLFMSIIVTG 853


>At3g29750.1 68416.m03756 hypothetical protein
          Length = 421

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 464 GEHAARLSGGHETREDDD--VFLRLAGAGHDNSPQGIVKELAIK 589
           G  A  + GGH+T+E+DD   F    G  H     G  + ++ K
Sbjct: 299 GGIAKEIQGGHDTKENDDEKSFFGQPGVKHSEVVAGSTRNMSTK 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,790
Number of Sequences: 28952
Number of extensions: 267183
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)