Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0231
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    47   4e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_Q4MZF3 Cluster: Vacuolar sorting protein 45, putative; ...    33   5.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = -2

Query: 519 FLFMHRWVNELTAHLVLSGYWSP*TSVYKVNA 424
           FL + RWV+ELTAHLVLSGYWSP   +Y VNA
Sbjct: 154 FLLL-RWVDELTAHLVLSGYWSP-RHLYDVNA 183


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 329 AGWWYLPVRSHKRSYQQ 279
           A WWYLP R+HKRSY +
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q4MZF3 Cluster: Vacuolar sorting protein 45, putative;
           n=2; Theileria|Rep: Vacuolar sorting protein 45,
           putative - Theileria parva
          Length = 649

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 464 PLNTKWAVSSFTH--LCINKNIAVISD*KYIITHKFMTLSF*LRIVHLF*DLTSRIA*PR 637
           PL  +W   +  H  + IN N  V+ D ++++   F         VH+  DL + I+  +
Sbjct: 288 PLMNQWTYRAMIHELIGINNNKIVVDDSEFVLNDHFFNSHIFHEFVHVEEDLNTLISQNK 347

Query: 638 LQTLKLIKLI-SLVTYS 685
           L T+  + ++ S  TY+
Sbjct: 348 LNTINTVNIVKSSKTYN 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,318,543
Number of Sequences: 1657284
Number of extensions: 13253856
Number of successful extensions: 25332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25330
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)