Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0231
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    29   0.88 
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    26   6.2  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 140 GKQARRWCIPARTHKTPYRQCFNNY 66
           G    R+C  +RT ++ Y QCF NY
Sbjct: 465 GLIGERFCKLSRTWRSTYEQCFKNY 489


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -3

Query: 188 VTTTKPFKPKRITATRGKQARRWCIP----ARTHKTPYRQCFNNYK 63
           +++ K +KPK + +    + + W +P    A  +   +    N+YK
Sbjct: 29  ISSLKSYKPKAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYK 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,831
Number of Sequences: 5004
Number of extensions: 55741
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)