Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0231
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195...    29   2.8  

>04_04_1558 -
           34417801-34417920,34418930-34419051,34419458-34419531,
           34419736-34419819,34419945-34420080,34420806-34420836,
           34421228-34421386,34422375-34422595,34422685-34422898
          Length = 386

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 374 AATLLKRITASRQK*AGWWYLPVRSHKRSYQQ*YV*TCLTVLNSSRSCAVTYLET*GRII 195
           A T LKRI + R    GW YLP+  + R ++      CLT  ++ +   + +      I+
Sbjct: 306 AGTFLKRIRSWR----GWDYLPLIGNSRPFEDIMWSVCLTTTSALKWAPLQWKHRKSPIL 361

Query: 194 DRVTT 180
           +++ T
Sbjct: 362 EKIGT 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,390,325
Number of Sequences: 37544
Number of extensions: 371772
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)