Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0230
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398     31   0.84 
04_04_0063 - 22441549-22442961                                         29   2.6  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   2.6  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     29   3.4  
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710...    29   3.4  
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058...    28   7.8  
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155...    28   7.8  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   7.8  

>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
          Length = 187

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -1

Query: 432 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 289
           V+T  SA   S +S A  AAAA G  T  + +    SA+ GNAAS  A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 429 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTNSN 256
           +T  +AT  S  + A+TA+ A         S+R VS+AKG   AAS + T   +  T S+
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 432 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 289
           ++T ++ATE  + +E   AAA +  +T       + + AK  AA RKA
Sbjct: 1   MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 447 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 289
           KRST+ S+  S+ +      A  AAA    STT T +    S+A   AA+  A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199


>01_01_0903 -
           7103091-7103120,7104092-7104651,7105208-7105328,
           7105545-7106567
          Length = 577

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 479 PQNQLSKDFLYPCCGSTPETLQDHLHQGPNSSHSYWPHNFYPTTKRREDTRICAG 643
           PQ + +KD       S  + +++    G  SS    PH+ Y   + R+DT+   G
Sbjct: 226 PQTRAAKDIKVVSHTSRKQQIKETTEMGRRSSDKQRPHSTYRNREGRKDTKSKTG 280


>05_07_0289 +
           29004842-29005213,29005318-29005605,29005707-29005853,
           29005939-29006175,29006261-29006524,29006609-29006725,
           29006991-29007042,29007903-29008303,29008380-29008598,
           29008692-29008925
          Length = 776

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -1

Query: 525 EPQQG*RKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTE 346
           EP++G R S    FW R+  +        TR    + +    I    +  A   G + TE
Sbjct: 311 EPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTE 370

Query: 345 TESIRRV 325
            E +++V
Sbjct: 371 EEVMKKV 377


>02_02_0471 -
           10714440-10714846,10714947-10715034,10715427-10715516,
           10715614-10715727
          Length = 232

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 435 RVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 289
           +VST + A E  I  +  TAAAA+ E   E  +    + A G     +A
Sbjct: 127 KVSTLLPADEEEIKPKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEA 175


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 90  GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 203
           G +     T   L+W+ P+WL   W M  AA N+    AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,151
Number of Sequences: 37544
Number of extensions: 284192
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)