Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0230
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +3

Query: 192 TPLPEVTQEA-SALPLSAADTECCYWWS---FWIPRWPFWRQHFP 314
           TPLP  T  + +  P    DT   YW +   +W P  P+W  + P
Sbjct: 29  TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 468 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 298
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I   +   A++G    
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 297 RKAT*GSRMTTNS 259
           +K T      T+S
Sbjct: 553 KKNTSRPSSVTSS 565


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 389 SEVMLDSVADMRVDTLVLLLYRNTSMFTYL-PQNQLSKDFLYPCCGSTPETLQDHLHQGP 565
           +  M+D++ + RV+ + LLL    SM  +L P+  L+       C +TP+      H  P
Sbjct: 427 NSAMMDALLNNRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486

Query: 566 NSS 574
            ++
Sbjct: 487 GNN 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,867
Number of Sequences: 59808
Number of extensions: 293667
Number of successful extensions: 999
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)