Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0230
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              32   2.1  
Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3 prot...    30   6.5  
Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   30   6.5  
U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.                  30   6.5  
U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.     30   6.5  
BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome associ...    30   6.5  
AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome associ...    30   6.5  
AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3 pr...    30   6.5  
AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.                30   8.6  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 429 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNS 259
           ST  S T S+ ++   +  +A   STT T    + SAA  +  S   T  S +TT S
Sbjct: 413 STTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTS 469


>Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3
           protein.
          Length = 711

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 625 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 658


>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 500 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 533


>U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.
          Length = 743

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 657 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 690


>U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.
          Length = 99

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 13  SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 46


>BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome
           associated protein protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 664


>AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome
           associated protein variant protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 664


>AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3
           protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGH 287
           +R R +GR H+RDR H++SV  +R+    L++ H
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSH 664


>AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 382 NRCRRQGRVHHRDRVHQKSVRRQ 314
           +R R +GR H+RDR H++SV R+
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK 653


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,556,442
Number of Sequences: 237096
Number of extensions: 1516666
Number of successful extensions: 4084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4084
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)